View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2047_high_3 (Length: 419)

Name: NF2047_high_3
Description: NF2047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2047_high_3
NF2047_high_3
[»] chr1 (4 HSPs)
chr1 (17-397)||(52316846-52317219)
chr1 (30-62)||(10470683-10470715)
chr1 (30-62)||(36205285-36205317)
chr1 (30-62)||(47123480-47123512)
[»] chr8 (4 HSPs)
chr8 (300-349)||(12715297-12715346)
chr8 (35-64)||(32597886-32597915)
chr8 (30-62)||(4941780-4941812)
chr8 (30-62)||(36114040-36114072)
[»] chr5 (4 HSPs)
chr5 (15-62)||(4292218-4292265)
chr5 (28-62)||(27021210-27021244)
chr5 (30-62)||(40791066-40791098)
chr5 (30-62)||(42146391-42146423)
[»] chr2 (5 HSPs)
chr2 (28-62)||(45714665-45714699)
chr2 (30-62)||(8170391-8170423)
chr2 (30-62)||(23358337-23358369)
chr2 (30-62)||(25747879-25747911)
chr2 (30-62)||(36548278-36548310)
[»] scaffold0381 (1 HSPs)
scaffold0381 (30-62)||(9180-9212)
[»] chr7 (1 HSPs)
chr7 (30-62)||(47217527-47217559)
[»] chr6 (1 HSPs)
chr6 (30-62)||(33899004-33899036)
[»] chr4 (6 HSPs)
chr4 (30-62)||(9889334-9889366)
chr4 (30-62)||(25312770-25312802)
chr4 (30-62)||(26426114-26426146)
chr4 (30-62)||(30842186-30842218)
chr4 (30-62)||(39636840-39636872)
chr4 (30-62)||(54150581-54150613)
[»] chr3 (3 HSPs)
chr3 (30-62)||(35425403-35425435)
chr3 (30-62)||(42475779-42475811)
chr3 (30-62)||(48189441-48189473)


Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 397
Target Start/End: Complemental strand, 52317219 - 52316846
Alignment:
Q  17 accttcaatttatttttaatcaaaatcaattttctcaaactcaattttcgtcatggcaaaactaaacacacgataacttgtttaaaccacttaaatcaga 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||    
T  52317219 accttcaatttatttttaatcaaaatgaattttctcaaactcaattttcgtcatggcaaaactaaacacacgataacttgtttaaa---------tcaga 52317129  T
Q  117 tgaaaattgcatctaacaattcaaataattgatttggcaggtttctcgaaacaacgcgtgaatttattgtattt-gatctgctttacttgtgtgtgagtt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52317128 tgaaaattgcatctaacaattcaaataattgatttggcaggtttctcgaaacaacgcgtgaatttattgtattttgatctgctttacttgtgtgtgagtt 52317029  T
Q  216 ttttggattgaaatgaacaaccaagtttttaacaatgaggagaacttaattccttagctcctcgacaaaactaaggtgttatcttttttgtggctaaaga 315  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  52317028 ttttggattgaaaggaacaaccaagtttttaacaatgaggagaacttaattccttagctcctcgacaaaactaagttgttatcttttttgtggctaaagg 52316929  T
Q  316 ctaagttttctagtgttactttcgtttattatacatgatggcttaaccctt-ttttgtttgagtactagttaatccttatttt 397  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||||||||    
T  52316928 ctaagtttcctagtgttactttcgtttatcatacatggtggcttaaccctttttttgtttgggtactagttaatccttatttt 52316846  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 10470683 - 10470715
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  10470683 ttttaatcaaaatcaattctctcaaactcaatt 10470715  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 36205285 - 36205317
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  36205285 ttttaatcaaaatcaattctctcaaactcaatt 36205317  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 47123480 - 47123512
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  47123480 ttttaatcaaaatcaattctctcaaactcaatt 47123512  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 12715346 - 12715297
Alignment:
Q  300 tttttgtggctaaagactaagttttctagtgttactttcgtttattatac 349  Q
    |||| |||||||||| |||||||| |||||||||||||||||||| ||||    
T  12715346 ttttggtggctaaaggctaagtttcctagtgttactttcgtttatcatac 12715297  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 32597915 - 32597886
Alignment:
Q  35 atcaaaatcaattttctcaaactcaatttt 64  Q
    ||||||||||||||||||||||||||||||    
T  32597915 atcaaaatcaattttctcaaactcaatttt 32597886  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 4941812 - 4941780
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  4941812 ttttaatcaaaatcaattctctcaaactcaatt 4941780  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 36114072 - 36114040
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  36114072 ttttaatcaaaatcaattctctcaaactcaatt 36114040  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 4292218 - 4292265
Alignment:
Q  15 tcaccttcaatttatttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||| ||||| |||||||||||||||||||||| ||||||||| ||||    
T  4292218 tcacattcaacttatttttaatcaaaatcaattctctcaaacttaatt 4292265  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 27021210 - 27021244
Alignment:
Q  28 atttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||| ||||||||||||||||||||||||||    
T  27021210 atttttaaccaaaatcaattttctcaaactcaatt 27021244  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 40791098 - 40791066
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||| ||||||||||||||||||||||||||    
T  40791098 ttttaaccaaaatcaattttctcaaactcaatt 40791066  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 42146391 - 42146423
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||| ||||||||||||||||||||||||||    
T  42146391 ttttaaccaaaatcaattttctcaaactcaatt 42146423  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 45714699 - 45714665
Alignment:
Q  28 atttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||||| ||||||||||||||    
T  45714699 atttttaatcaaaatcaattctctcaaactcaatt 45714665  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 8170391 - 8170423
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  8170391 ttttaatcaaaatcaattctctcaaactcaatt 8170423  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 23358337 - 23358369
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  23358337 ttttaatcaaaatcaattctctcaaactcaatt 23358369  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 25747911 - 25747879
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  25747911 ttttaatcaaaatcaattctctcaaactcaatt 25747879  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 36548278 - 36548310
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  36548278 ttttaatcaaaatcaattctctcaaactcaatt 36548310  T

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Target: scaffold0381 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 9180 - 9212
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  9180 ttttaatcaaaatcaattctctcaaactcaatt 9212  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 47217559 - 47217527
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  47217559 ttttaatcaaaatcaattctctcaaactcaatt 47217527  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 33899036 - 33899004
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  33899036 ttttaatcaaaatcaattctctcaaactcaatt 33899004  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 9889366 - 9889334
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  9889366 ttttaatcaaaatcaattctctcaaactcaatt 9889334  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 25312770 - 25312802
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  25312770 ttttaatcaaaatcaattctctcaaactcaatt 25312802  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 26426146 - 26426114
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||| ||||||||||||||||||||||||||    
T  26426146 ttttaaccaaaatcaattttctcaaactcaatt 26426114  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 30842186 - 30842218
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  30842186 ttttaatcaaaatcaattctctcaaactcaatt 30842218  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 39636840 - 39636872
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  39636840 ttttaatcaaaatcaattctctcaaactcaatt 39636872  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 54150581 - 54150613
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  54150581 ttttaatcaaaatcaattctctcaaactcaatt 54150613  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 35425403 - 35425435
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  35425403 ttttaatcaaaatcaattctctcaaactcaatt 35425435  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 42475779 - 42475811
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  42475779 ttttaatcaaaatcaattctctcaaactcaatt 42475811  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 48189473 - 48189441
Alignment:
Q  30 ttttaatcaaaatcaattttctcaaactcaatt 62  Q
    |||||||||||||||||| ||||||||||||||    
T  48189473 ttttaatcaaaatcaattctctcaaactcaatt 48189441  T

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