View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2047_high_5 (Length: 374)
Name: NF2047_high_5
Description: NF2047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2047_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 30952382 - 30952035
Alignment:
| Q |
16 |
cttattacttatgaaaatgcagaagtttacaagtccaaggttaagaaatggcatgatgccaagattcgaaaaaaggaattccaagtgggggagaaagtct |
115 |
Q |
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| T |
30952382 |
cttattacttat-aaaatttagaagtttacaagtccaaggttaggaaatggcatgatgccaagattcgaaaaaaggaattccaagtgggggagaaagtct |
30952284 |
T |
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| Q |
116 |
tactttgtaactccaaactaaaactatttcctaaaaaattaaattcaagatggtttagaccttttgtgatttctcaagtcttccccaatggaacaattac |
215 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30952283 |
tactctgtaactccaaactaaacctatttcctaaaaaattaaattcaagatggtttagaccttttgtgatttctcaagtcttcccctatggaacaattac |
30952184 |
T |
|
| Q |
216 |
attgaaagaggattatgtacgtaaattcaaggtgaacgccagagagtcaagcactacttgattctggataacataaccaacaatagaaggtcgataaatt |
315 |
Q |
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| T |
30952183 |
attgaaagaggattatgtatggaaattcaaggtgaacgccagagagtcaagcactacttgattctggataacataaccaacaatagaaggtcgataaatt |
30952084 |
T |
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| Q |
316 |
ttggagaagcttcaacaaacttggaatcaacctccctagccctcctatg |
364 |
Q |
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| T |
30952083 |
ttggagaagcttcaacaaacttggaatcaacctccctagccctcctatg |
30952035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 30946477 - 30946189
Alignment:
| Q |
16 |
cttattacttatgaaaatgcagaagtttacaagtccaaggttaagaaatggcatgatgccaagattcgaaaaaaggaattccaagtgggggagaaagtct |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| |
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| T |
30946477 |
cttattacttatgaaaatgcagaagtt-acaagtccaaggttaataaatggcatgatgccaatattcaaaaaaaggaattccaagtaggggagaaagtct |
30946379 |
T |
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| Q |
116 |
tactttgtaactccaaactaaaactatttcctaaaaaattaaattcaagatggtttagaccttttgtgatttctcaagtcttccccaatggaacaattac |
215 |
Q |
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| T |
30946378 |
tactctgtaactccaaactaaagctatttcctagaaaattaaattcaagatggtttagacc--------tttcttaagtcttctccaatggaacaattac |
30946287 |
T |
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| Q |
216 |
attgaaagaggattatgtacgtaaattcaaggtgaacgccagagagtcaagcactacttgattctggataacataaccaacaatagaaggtcgataaa |
313 |
Q |
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||||| ||||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30946286 |
attgacagaggattatgtatggaaattcaagttgaacgccaaagagtcaagcactacttgattctggataacataactaacaatagaaggtcgataaa |
30946189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 13208363 - 13208261
Alignment:
| Q |
15 |
acttattacttatgaaaatgcagaagtttacaagtccaaggttaagaaatggcatgatg-ccaagattcgaaaaaaggaattccaagtgggggagaaagt |
113 |
Q |
| |
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|||||||||||| || |||||| || |||| |||||||| ||||||||||| ||||||| ||||||| |||| ||||||||||| ||||||||||| |
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| T |
13208363 |
acttattacttaggagaatgcacaaatttaaaagtccaaagttaagaaatgacatgatgttaaagattcagaaaagagaattccaagt-ggggagaaagt |
13208265 |
T |
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| Q |
114 |
ctta |
117 |
Q |
| |
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|||| |
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| T |
13208264 |
ctta |
13208261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 17059500 - 17059535
Alignment:
| Q |
41 |
tttacaagtccaaggttaagaaatggcatgatgcca |
76 |
Q |
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| T |
17059500 |
tttacaagtccaaggttaagaagtggcatgatgcca |
17059535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 364
Target Start/End: Original strand, 26280191 - 26280268
Alignment:
| Q |
287 |
cataaccaacaatagaaggtcgataaattttggagaagcttcaacaaacttggaatcaacctccctagccctcctatg |
364 |
Q |
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|||||| ||||| ||||||| ||| ||| ||| |||| |||| ||| |||||||||| |||||||||||||||||| |
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| T |
26280191 |
cataactaacaagagaaggttgatgaatgttgacaaagcatcaaaaaatttggaatcaagctccctagccctcctatg |
26280268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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