View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2047_low_1 (Length: 640)

Name: NF2047_low_1
Description: NF2047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2047_low_1
NF2047_low_1
[»] chr4 (4 HSPs)
chr4 (20-622)||(54396195-54396797)
chr4 (20-622)||(23587527-23588129)
chr4 (23-622)||(23596379-23596978)
chr4 (550-622)||(35132750-35132822)
[»] chr7 (22 HSPs)
chr7 (19-622)||(8102438-8103041)
chr7 (23-444)||(8017385-8017806)
chr7 (155-622)||(39985553-39986020)
chr7 (554-622)||(7877527-7877595)
chr7 (212-372)||(8570275-8570435)
chr7 (212-372)||(8581664-8581824)
chr7 (503-622)||(8602229-8602348)
chr7 (550-621)||(17260543-17260614)
chr7 (504-622)||(8590894-8591012)
chr7 (554-615)||(8382677-8382738)
chr7 (550-622)||(10494168-10494240)
chr7 (578-621)||(6789842-6789885)
chr7 (491-621)||(8585501-8585631)
chr7 (287-376)||(7877773-7877862)
chr7 (554-611)||(8636148-8636205)
chr7 (581-621)||(1301797-1301837)
chr7 (550-622)||(3147574-3147646)
chr7 (215-339)||(8590605-8590729)
chr7 (311-375)||(8609980-8610044)
chr7 (325-389)||(8628609-8628673)
chr7 (550-622)||(13333250-13333322)
chr7 (20-88)||(17267711-17267779)
[»] chr2 (12 HSPs)
chr2 (154-357)||(17716746-17716949)
chr2 (488-622)||(17716487-17716621)
chr2 (154-357)||(17718010-17718213)
chr2 (413-546)||(5445621-5445754)
chr2 (210-282)||(12258715-12258787)
chr2 (555-622)||(12234996-12235063)
chr2 (557-622)||(12245200-12245265)
chr2 (272-357)||(17705797-17705882)
chr2 (578-622)||(7542556-7542600)
chr2 (310-357)||(17648100-17648147)
chr2 (310-357)||(17666742-17666789)
chr2 (554-622)||(16657311-16657379)
[»] chr1 (1 HSPs)
chr1 (554-615)||(4678359-4678420)


Alignment Details
Target: chr4 (Bit Score: 603; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 20 - 622
Target Start/End: Original strand, 54396195 - 54396797
Alignment:
Q  20 ccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396195 ccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatat 54396294  T
Q  120 tcaattcttcaaatctcgcccttgtaatagttgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396295 tcaattcttcaaatctcgcccttgtaatagttgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgt 54396394  T
Q  220 tctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396395 tctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatga 54396494  T
Q  320 ttcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396495 ttcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacat 54396594  T
Q  420 cgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctc 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396595 cgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctc 54396694  T
Q  520 attaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagca 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396695 attaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagca 54396794  T
Q  620 ttc 622  Q
    |||    
T  54396795 ttc 54396797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 622
Target Start/End: Complemental strand, 23588129 - 23587527
Alignment:
Q  20 ccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatat 119  Q
    ||||||||||||||||| ||||| |||    ||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||| |||||| |    
T  23588129 ccaccaacaagaacaacatcatggacactgttcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaacagatccatgt 23588030  T
Q  120 tcaattcttcaaatctcgcccttgtaatagttgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgt 219  Q
    | |  |||||||| |  ||||  || || || |  || || ||||| || |||||||| ||||||||||| || || || |||||||| || ||||| ||    
T  23588029 tgagctcttcaaaacgagcccgagtgatggtagtgtaaaagtcaataccctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggt 23587930  T
Q  220 tctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatga 319  Q
     |||||||||||||| ||||| ||||| ||||| || | ||| |||| ||| |||||||||||||||||||| |||||| | || ||   |||||||||     
T  23587929 cctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatgg 23587830  T
Q  320 ttcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacat 419  Q
    |||||||| |||||||||||||||||||| || | ||| ||||||||||| |||||||| || || ||||| ||||| ||||||||||| || |||||||    
T  23587829 ttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttgacctcaaagataccttcctcaatagtaagtagggaaacat 23587730  T
Q  420 cgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctc 519  Q
    | ||||||||||| || |  || |||||||| |||||||  || ||  | || | |||||||||||| | |||||||||||| |||||||| ||||| ||    
T  23587729 caaaagttccaccaccaagatcgaaaataagaacgttcttctcacccgtgcttgtagctttcttatcaagaccataagcaatagcagcagcggtaggttc 23587630  T
Q  520 attaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagca 619  Q
    ||||||||| ||||||||||| |  || |||||  |||| |||||||| |||||||||||||| ||||| ||||| |||||||| ||||| ||||| |||    
T  23587629 attaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgttgtgaatcgttgaagtaagcaggcacagttacaacggca 23587530  T
Q  620 ttc 622  Q
    |||    
T  23587529 ttc 23587527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 23 - 622
Target Start/End: Complemental strand, 23596978 - 23596379
Alignment:
Q  23 ccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattca 122  Q
    |||||||||||||| |||| ||||    ||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||| | |||||| || |    
T  23596978 ccaacaagaacaacatcatcaacactgttcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttga 23596879  T
Q  123 attcttcaaatctcgcccttgtaatagttgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttct 222  Q
      |||||||| |  || |  ||||| || |  || || ||||| || |||||||||||||||||||| || || || |||||||| || ||||| || ||    
T  23596878 gctcttcaaaacgagcgcgagtaatggtagtgtaaaagtcaataccctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcct 23596779  T
Q  223 cttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattc 322  Q
    |||||||||||||||||| ||||| || || || | ||| |||| ||| ||||||||||| |||||||| |||||| | || ||   ||||||||| |||    
T  23596778 cttagctctctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttc 23596679  T
Q  323 accattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcga 422  Q
    ||||| |||||||||||||||||||| || | ||| ||||||||||| ||||||||||| || ||||| ||||| |||||||||||||| |||||||| |    
T  23596678 accatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaa 23596579  T
Q  423 aagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcatt 522  Q
    |||||||||| || |  || |||||||| |||||||  || ||  | || | |||||||||||| | |||||||||||| || |||||||| ||||| ||    
T  23596578 aagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcggcagcagtgggctcgtt 23596479  T
Q  523 aataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 622  Q
    |||||| |||| |||||| |  || |||||  |||||||||| || |||||||||||||| ||||| ||||| || ||||| || || ||||| ||||||    
T  23596478 aataattctcatcacattgagtccagaaatgacaccagcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattc 23596379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 622
Target Start/End: Original strand, 35132750 - 35132822
Alignment:
Q  550 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 622  Q
    |||||||||||||||| | || ||||  |||||||||||| | ||||||||||| ||||||||||| ||||||    
T  35132750 aatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattc 35132822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 9e-78; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 19 - 622
Target Start/End: Original strand, 8102438 - 8103041
Alignment:
Q  19 accaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccata 118  Q
    |||||||||||||||||| ||||||||    ||||| || ||||||||||| || | ||||||||||||||| |||||||| ||||| |||| ||||||     
T  8102438 accaccaacaagaacaacatcatgaactgtgctcttgtccatcttagcatctctcaaacacttctcaacaggctccatacacttcctgaacagatccatg 8102537  T
Q  119 ttcaattcttcaaatctcgcccttgtaatagttgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtg 218  Q
    || | ||| |||||||| || |  || || || |  || |||||||  || ||||||||||||||||| || || || || || || ||||| || || |    
T  8102538 ttaagttcctcaaatctggcacgggtgattgtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcggttgatgagagag 8102637  T
Q  219 ttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatg 318  Q
    ||||||| ||||||||||| || ||||| |||||||| |  || || |  || || |||||||||||||| || |||||| |||||||   |||||||||    
T  8102638 ttctcttcgctctctcacatgcggttctcaatctcctaagtgccctagggtttccgctaatatccttcttgttcttcctcttaaactcttgaacaaaatg 8102737  T
Q  319 attcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaaca 418  Q
      | ||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| || || || ||||||||||||||||| || |||    
T  8102738 ggtaaccattctgttatcaaaatcttcaccaccaagatgggtatcacctgcagtagccttaacttcaaatataccctcttcaatagtaagaagtgacaca 8102837  T
Q  419 tcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggct 518  Q
    || ||||| ||||| ||||| ||||| || | ||||||||  || ||    || |  || || || || | ||| || ||||| ||||||||||| ||||    
T  8102838 tcaaaagtaccaccacccaaatcaaagatcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccgtaggcaatagcagcagcagttggct 8102937  T
Q  519 cattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagc 618  Q
    |||||||||| ||||| ||||| ||||| |  ||| ||||||||||||| || |||||||| |||||||||||||| |||||||| ||||| || || ||    
T  8102938 cattaataattctcaaaacatttaaaccagcgataacaccagcatctttagttgcttgacgctgagaatcattgaagtaagcagggacagtgacgacggc 8103037  T
Q  619 attc 622  Q
    ||||    
T  8103038 attc 8103041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 23 - 444
Target Start/End: Complemental strand, 8017806 - 8017385
Alignment:
Q  23 ccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattca 122  Q
    |||||||||||||| |||||||||    |||| || ||||||||||| || | ||||||||||||||| |||||||| || || |||| |||||| || |    
T  8017806 ccaacaagaacaacatcatgaacagagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacactttctgaacagatccatgttaa 8017707  T
Q  123 attcttcaaatctcgcccttgtaatagttgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttct 222  Q
     ||| |||||||| || |  || || || |  || |||||||  || ||||||||||||||||| || || || || || ||||| ||||| || |||||    
T  8017706 gttcctcaaatcttgcacgggtgattgtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcagtagaagagagagttct 8017607  T
Q  223 cttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattc 322  Q
    ||| ||||||||||||||||| || || ||||| |  ||||| |  || ||||||||||||||||| || |||||| ||||||||  ||||||||||||     
T  8017606 cttcgctctctcacaagctgtcctcaacctcctaagtgctctagggtttccactaatatccttcttgttcttcctcttaaactcctgaacaaaatgatta 8017507  T
Q  323 accattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcga 422  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||| || || || |||||||||||||||||||| ||||| |    
T  8017506 accattctgttgtcaaaatcttcaccaccaagatgggtatcaccagcagtagccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaa 8017407  T
Q  423 aagttccacctcccaagtcaaa 444  Q
    |||| |||||||||||||||||    
T  8017406 aagtaccacctcccaagtcaaa 8017385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 155 - 622
Target Start/End: Original strand, 39985553 - 39986020
Alignment:
Q  155 tagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctcc 254  Q
    |||||||||||||||||||| | |||||||||||| || || ||||| ||||| ||||| || |||||||| ||||| |||||||| || || || ||||    
T  39985553 tagaaatcaattccttcaaaaagagaatcaatttcaatggtggtctgggcagtagaagagagagttctcttcgctctttcacaagcagtcctcaacctcc 39985652  T
Q  255 tcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaag 354  Q
    | | |||||| |  || ||||| || |||||||| || || ||| | |||||   |||||| || |||||||||||||| |||||||| ||||| |||||    
T  39985653 taagagctctggggttgccactgatgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttgtcaaaatcctcacctccaag 39985752  T
Q  355 atgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacg 454  Q
    ||| || || || || || |||||||| || ||||| || ||||||||||| || | ||| ||||| ||||| ||||| || | |||||| || |  ||     
T  39985753 atgggtgtctccggctgtggctttcacctcaaagataccctcttcaatagttagcaaagagacatcaaaagtaccaccaccaaggtcaaagatcaagaca 39985852  T
Q  455 ttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatag 554  Q
    ||||  || ||    || |  |||||||| || | |||||||||||| ||||||||||| |||||||| ||||| | ||  ||||| | ||| | ||||     
T  39985853 ttcttctctccaacactggttgctttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataa 39985952  T
Q  555 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 622  Q
    | |||||||| || ||||||||||| || || ||||| || |||||||| ||||||||||||||||||    
T  39985953 ctccagcatccttggtagcttgacgctgggagtcattaaagtaagcagggacagtaacaacagcattc 39986020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 554 - 622
Target Start/End: Complemental strand, 7877595 - 7877527
Alignment:
Q  554 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 622  Q
    |||||||||||||| || ||||  ||||||||||||||||||||||| || ||||||||||| ||||||    
T  7877595 gcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattc 7877527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 212 - 372
Target Start/End: Original strand, 8570275 - 8570435
Alignment:
Q  212 gaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaa 311  Q
    |||||||| || || || |||||||||||||||||||| |||||||| ||| |||  || | |||||||||||  || || ||| || | |||| |   |    
T  8570275 gaaagtgtcctttttgccctctcacaagctgttcttaacctcctcaaggcttttgggttcctactaatatcctcgttgttcttcttcttgaacttcttca 8570374  T
Q  312 caaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagt 372  Q
    |||| ||| ||| |||||||||||||||||||||||| || || ||||| || ||||||||    
T  8570375 caaagtgagtcaacattctgttatcaaaatcttcacctcccaggtgagtgtctccagcagt 8570435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 212 - 372
Target Start/End: Original strand, 8581664 - 8581824
Alignment:
Q  212 gaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaa 311  Q
    |||||||| || || |||||||||||||| || || || || || |  ||| ||| ||| ||| |||| ||||  |||| ||| ||| | |||||||| |    
T  8581664 gaaagtgtccttttcgctctctcacaagcagtcctcaaccttctaatggcttttggatttccaataatctcctctttatgttttctcttgaactccgaca 8581763  T
Q  312 caaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagt 372  Q
    |||| ||||||||||||||||||||||||||||| || || || ||||| || ||||||||    
T  8581764 caaagtgattcaccattctgttatcaaaatcttcccctcccaggtgagtgtctccagcagt 8581824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 503 - 622
Target Start/End: Original strand, 8602229 - 8602348
Alignment:
Q  503 gcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcag 602  Q
    ||||| ||||| |||||||| || |||| ||  ||||| | ||| | ||| |||||||||||||| || ||||  || ||||||||||| |||||||| |    
T  8602229 gcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccg 8602328  T
Q  603 gaacagtaacaacagcattc 622  Q
    | ||||||||||| ||||||    
T  8602329 gcacagtaacaactgcattc 8602348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 550 - 621
Target Start/End: Original strand, 17260543 - 17260614
Alignment:
Q  550 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcatt 621  Q
    |||| ||||||||||| | || ||||  || ||||||||||||||||||||||||||||||| |||| ||||    
T  17260543 aataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacatt 17260614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 622
Target Start/End: Original strand, 8590894 - 8591012
Alignment:
Q  504 cagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcagg 603  Q
    |||| ||||| || |||||||| |||| ||  |||||||| || | |||  ||||||||||||| |||||||  |  ||||||||||| |||||||| ||    
T  8590894 cagcggcagttggttcattaattatccgcattacattcaagccagcaatgacaccagcatctttggtagctttcctctgagaatcattaaaataagctgg 8590993  T
Q  604 aacagtaacaacagcattc 622  Q
     ||||||||||| ||||||    
T  8590994 cacagtaacaactgcattc 8591012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 554 - 615
Target Start/End: Complemental strand, 8382738 - 8382677
Alignment:
Q  554 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaac 615  Q
    |||||||||||||| || ||||  |||||||||||||||||||| ||||| || ||||||||    
T  8382738 gcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcacggtaacaac 8382677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 622
Target Start/End: Complemental strand, 10494240 - 10494168
Alignment:
Q  550 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 622  Q
    |||||||||||||||  | ||||| |  ||||||||||| ||||| ||||| || ||||||||||||||||||    
T  10494240 aatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattc 10494168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 578 - 621
Target Start/End: Original strand, 6789842 - 6789885
Alignment:
Q  578 cgttgagaatcattgaaataagcaggaacagtaacaacagcatt 621  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||    
T  6789842 cgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 491 - 621
Target Start/End: Complemental strand, 8585631 - 8585501
Alignment:
Q  491 ccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcat 590  Q
    ||||| ||||| || |||||||| || ||||| || |||||||  ||||| |  || | ||| |||||||||||  | || ||||  || ||||||||||    
T  8585631 ccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcat 8585532  T
Q  591 tgaaataagcaggaacagtaacaacagcatt 621  Q
    ||||||||||||| ||||| ||||| |||||    
T  8585531 tgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 376
Target Start/End: Complemental strand, 7877862 - 7877773
Alignment:
Q  287 ttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 376  Q
    ||||| |||||| ||||||||   || ||||| |||| ||||||||||||||| || || ||||| || |||||||| || |||||||||    
T  7877862 ttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagct 7877773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 611
Target Start/End: Complemental strand, 8636205 - 8636148
Alignment:
Q  554 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaa 611  Q
    |||||||||||||| || | || ||| |||||||||||||||||||| || |||||||    
T  8636205 gcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaa 8636148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 581 - 621
Target Start/End: Original strand, 1301797 - 1301837
Alignment:
Q  581 tgagaatcattgaaataagcaggaacagtaacaacagcatt 621  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  1301797 tgagaatcattgaaatgtgcaggcacagtaacaacagcatt 1301837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 622
Target Start/End: Original strand, 3147574 - 3147646
Alignment:
Q  550 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 622  Q
    |||| ||||||||||| | || ||||  || |||| |||||||||||||||||| || |||||||| ||||||    
T  3147574 aataacaccagcatctattgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattc 3147646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 339
Target Start/End: Original strand, 8590605 - 8590729
Alignment:
Q  215 agtgttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaa 314  Q
    ||||| || ||||| ||||||||||||||| | || ||||| | ||| ||||| || ||||| | ||||   ||||| |||||||||||||||   || |    
T  8590605 agtgtccttttagccctctcacaagctgttttcaacctcctaagagcccttgcgttcccacttaaatccactttattcttcctcctaaactccttcacca 8590704  T
Q  315 aatgattcaccattctgttatcaaa 339  Q
    |||| |  |||||||||||||||||    
T  8590705 aatggtgaaccattctgttatcaaa 8590729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 311 - 375
Target Start/End: Original strand, 8609980 - 8610044
Alignment:
Q  311 acaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagc 375  Q
    ||||| ||||| |||||||||| |||||| || || || ||||| |||||||| |||||||||||    
T  8609980 acaaagtgattaaccattctgtgatcaaagtcctctcctccaaggtgagtatctccagcagtagc 8610044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 8628609 - 8628673
Alignment:
Q  325 cattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaaga 389  Q
    ||||||||||||||| || || |||||||| |||||||  |||||||| ||||| ||||| ||||    
T  8628609 cattctgttatcaaagtcctctccaccaaggtgagtatttccagcagtggctttaacttcaaaga 8628673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 622
Target Start/End: Complemental strand, 13333322 - 13333250
Alignment:
Q  550 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 622  Q
    |||||||||||||||| | || || |  || |||||||||||||| ||||| || ||||||||||| ||||||    
T  13333322 aatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattc 13333250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 17267711 - 17267779
Alignment:
Q  20 ccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaaca 88  Q
    ||||||||||| ||||| |||| |||    ||||| |||||||||||||| || |||||||||||||||    
T  17267711 ccaccaacaaggacaacatcatcaactctgctcttgtcaatcttagcatcactaagacacttctcaaca 17267779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 154 - 357
Target Start/End: Complemental strand, 17716949 - 17716746
Alignment:
Q  154 atagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctc 253  Q
    ||||||||||||||| ||||| | | |||||||||| || || ||||| ||||| || || || | |||||| || ||||||||||| || || || |||    
T  17716949 atagaaatcaattccctcaaatagacaatcaatttcaatggtggtctgggcagtagatgatagagctctcttcgccctctcacaagcagtcctcaacctc 17716850  T
Q  254 ctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaa 353  Q
     | | ||||||||  || |||||||| |||||||| || || ||| | |||||   |||||| || |||||||||||||||| |||||| ||||| ||||    
T  17716849 ataagagctcttgggttgccactaatgtccttcttgttctttctcttgaactctcgaacaaagtggttcaccattctgttattaaaatcctcacctccaa 17716750  T
Q  354 gatg 357  Q
    ||||    
T  17716749 gatg 17716746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 488 - 622
Target Start/End: Complemental strand, 17716621 - 17716487
Alignment:
Q  488 aaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaat 587  Q
    |||||||||||||| || |||||||| |||||||||||||| ||||  | ||| | ||| | ||||||||||||||  || |||||||| |  ||||||     
T  17716621 aaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgagaaa 17716522  T
Q  588 cattgaaataagcaggaacagtaacaacagcattc 622  Q
     ||| || |||||||| ||||||||||| ||||||    
T  17716521 aattaaagtaagcagggacagtaacaacggcattc 17716487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 357
Target Start/End: Complemental strand, 17718213 - 17718010
Alignment:
Q  154 atagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctc 253  Q
    ||||||||||||||| ||||| | | |||||||||| || || ||||| | ||| || || || | |||||| || ||||||||||| || || ||  ||    
T  17718213 atagaaatcaattccctcaaatagacaatcaatttcaatggtggtctgggaagtagatgatagagctctcttcgccctctcacaagcagtcctcaacttc 17718114  T
Q  254 ctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaa 353  Q
     | | ||||||||  || |||||||| |||||||| || || ||| | |||||   |||||| || |||||||||||||||| |||||| ||||| ||||    
T  17718113 ataagagctcttgggttgccactaatgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttattaaaatcctcacctccaa 17718014  T
Q  354 gatg 357  Q
    ||||    
T  17718013 gatg 17718010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 413 - 546
Target Start/End: Complemental strand, 5445754 - 5445621
Alignment:
Q  413 gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag 512  Q
    ||||||||||| |||||||| || |  ||||| | |||||| ||||  || |||| |||| |   |||||| ||||||||||||||||| ||||| ||||    
T  5445754 gaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcag 5445655  T
Q  513 taggctcattaataatcctcaacacattcaaacc 546  Q
    ||||||| || || ||||||| |||||| |||||    
T  5445654 taggctcgttgatgatcctcatcacattaaaacc 5445621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 12258787 - 12258715
Alignment:
Q  210 aagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatc 282  Q
    ||||||||| ||| || || ||||||||||||||| | ||||||||||||||||||| ||| ||||| |||||    
T  12258787 aagaaagtgatctttttgcactctcacaagctgttttcaatctcctcaaagctcttggatttccacttatatc 12258715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 622
Target Start/End: Original strand, 12234996 - 12235063
Alignment:
Q  555 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 622  Q
    ||||||||||| | || ||||  |||||||||||||||||||||||||| || |||||||| ||||||    
T  12234996 caccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattc 12235063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 557 - 622
Target Start/End: Complemental strand, 12245265 - 12245200
Alignment:
Q  557 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 622  Q
    ||||||||| |||| ||||  || ||||||||| | ||||||||||| ||||||||||||||||||    
T  12245265 ccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattc 12245200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 17705882 - 17705797
Alignment:
Q  272 ccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 357  Q
    |||||||| |||||||| || || ||| | |||||  ||||||| || |||||||||||||||| |||||| ||||| ||||||||    
T  17705882 ccactaatgtccttcttcttctttctcttgaactcttaaacaaagtggttcaccattctgttattaaaatcctcacctccaagatg 17705797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 622
Target Start/End: Original strand, 7542556 - 7542600
Alignment:
Q  578 cgttgagaatcattgaaataagcaggaacagtaacaacagcattc 622  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||    
T  7542556 cgttgagaatcattaaaataagcaggtacagtaacaactgcattc 7542600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 17648147 - 17648100
Alignment:
Q  310 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 357  Q
    |||||| ||||||||||||||||||| |||||| ||||| ||||||||    
T  17648147 aacaaagtgattcaccattctgttattaaaatcctcacctccaagatg 17648100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 17666789 - 17666742
Alignment:
Q  310 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 357  Q
    |||||| ||||||||||||||||||| |||||| ||||| ||||||||    
T  17666789 aacaaagtgattcaccattctgttattaaaatcctcacctccaagatg 17666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 554 - 622
Target Start/End: Complemental strand, 16657379 - 16657311
Alignment:
Q  554 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 622  Q
    |||||||||||| | || ||||  || || ||||||||||| ||||| || ||||||||||||||||||    
T  16657379 gcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattc 16657311  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 554 - 615
Target Start/End: Complemental strand, 4678420 - 4678359
Alignment:
Q  554 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaac 615  Q
    |||||||||||| | |||||||  ||||||||||||||||| || ||||| |||||||||||    
T  4678420 gcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaac 4678359  T

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