View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2047_low_10 (Length: 303)
Name: NF2047_low_10
Description: NF2047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2047_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 57 - 171
Target Start/End: Complemental strand, 5281583 - 5281470
Alignment:
| Q |
57 |
gacagagtcggttctgcttggaatgctaccataggaggaataaacgtaccaaaattaatacaccattttccaaaattacaatctttttcatttcattttc |
156 |
Q |
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| T |
5281583 |
gacagagtcggttctgcttggaatgctaccataggaggaataaacgtaccaaaattaatacaccattttccaatattac-atctttttcatttcattttc |
5281485 |
T |
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| Q |
157 |
ttttgtctgtaaagt |
171 |
Q |
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| T |
5281484 |
ttttgcctgtaaagt |
5281470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 5281465 - 5281409
Alignment:
| Q |
229 |
gacactaaaaagttgattaaattcccttaaaaagaattgtttgatcaaattaaatta |
285 |
Q |
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| T |
5281465 |
gacactaaaaagttgattaaattcccttaaaaagaattgtttgatcaaattaaatta |
5281409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 5281611 - 5281578
Alignment:
| Q |
17 |
tcaattacgcggcgagacggtagcgttggacaga |
50 |
Q |
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| T |
5281611 |
tcaattacgcggcgagacggtagagttggacaga |
5281578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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