View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2047_low_19 (Length: 245)
Name: NF2047_low_19
Description: NF2047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2047_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 36916620 - 36916843
Alignment:
| Q |
1 |
cgaattcattgcaatcaaacaacaatgcttcttnnnnnnncatttcaacaatgattaatattttttaaaaatatgatgaaagaagttgaataaagtatgc |
100 |
Q |
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| T |
36916620 |
cgaattcattgcaaccaaacaacaatgcttcttaaaaaaacatttcaacaatgattaatattttttaaaaatatgatgaaagaagttgaataaagtatgc |
36916719 |
T |
|
| Q |
101 |
gatagacccacatttatgcaagagaaagagtaataatagttaatgcttgttgaaaccttgtacttcaataacaatatctcttgnnnnnnnggacaaacca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
36916720 |
gatagacccacatttatgcaagagaaagagtaataatagctaatgcttgtagaaaccttgtccttcaataacaatatctcttgtttttttggacaaacca |
36916819 |
T |
|
| Q |
201 |
ccatctagtcaaacaaagtgtatg |
224 |
Q |
| |
|
||||||||||| ||||||||||| |
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|
| T |
36916820 |
ccatctagtcatccaaagtgtatg |
36916843 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 49628577 - 49628633
Alignment:
| Q |
69 |
aaatatgatgaaagaagttgaataaagtatgcgatagacccacatttatgcaagaga |
125 |
Q |
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|
| T |
49628577 |
aaatatgatgaaagaaattgaataaagaatgcaatagaaccacatttacgcaagaga |
49628633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 36833664 - 36833720
Alignment:
| Q |
69 |
aaatatgatgaaagaagttgaataaagtatgcgatagacccacatttatgcaagaga |
125 |
Q |
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||||||||| ||||||||||||||||| |||| || || ||||||||||||||||| |
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|
| T |
36833664 |
aaatatgataaaagaagttgaataaagaatgcaatggaaacacatttatgcaagaga |
36833720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 92
Target Start/End: Complemental strand, 4392825 - 4392797
Alignment:
| Q |
64 |
tttaaaaatatgatgaaagaagttgaata |
92 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
4392825 |
tttaaaaatatgatgaaagaagttgaata |
4392797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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