View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2047_low_2 (Length: 426)
Name: NF2047_low_2
Description: NF2047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2047_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 36916612 - 36916207
Alignment:
| Q |
1 |
tagacacttccaatgaaaatgaaataaagatgtcatgtgacgtatgaagataatttagtctatatttgatattacggtggatatatcagaatcacgacga |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
36916612 |
tagacacttacaatgaaaatgaaataaagatgtcatgtgacgtatgaagataatttagtctatatttaatattacagtggatatatcataatcacgac-- |
36916515 |
T |
|
| Q |
101 |
tccaccgtaannnnnnnnnnaactacactttgtaatttctataaaattatagcggatcatcgtaattctaacatactcaccatctaatatcaaaatacac |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36916514 |
-----cgtagttttttttttaactacactttgtaatttctataaaattatagcggatcatcgtaattctaacatactcaccatctaatatcaaaatacac |
36916420 |
T |
|
| Q |
201 |
ttaccttgtttctttattaaaagcatcattgaagttgctctaacctctccttggtttatttaaatatataccacctcccctttatttcatcaaagaaaga |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36916419 |
ttacgttgtttctttattaaaagcatcattgaagttgctctaacctctccttggtttatttaaatatataccacctcccctctatttcatcaaagaaaga |
36916320 |
T |
|
| Q |
301 |
acaatgactccccctactgttattcgtgtaatccattttgtaattatttaaaaatgggttgtattgaatttgtgttaaccacacatgaacaatacaaatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36916319 |
acaatgactccccctactgttattcgtgtaatccattttgtaattatttaaaaatgggttgtattgaatttgtgttaatcacacatgaacaatacaaatg |
36916220 |
T |
|
| Q |
401 |
aaatgaatacata |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
36916219 |
aaatgaatacata |
36916207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 37853556 - 37853601
Alignment:
| Q |
55 |
ttagtctatatttgatattacggtggatatatcagaatcacgacga |
100 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
37853556 |
ttagtctatgtttgatatcacggtagatatattagaatcacgacga |
37853601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University