View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2047_low_22 (Length: 233)

Name: NF2047_low_22
Description: NF2047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2047_low_22
NF2047_low_22
[»] chr1 (3 HSPs)
chr1 (38-130)||(6274691-6274783)
chr1 (125-182)||(6274816-6274873)
chr1 (1-29)||(6274645-6274673)
[»] chr7 (2 HSPs)
chr7 (126-178)||(44533666-44533718)
chr7 (131-173)||(7282163-7282205)
[»] chr4 (1 HSPs)
chr4 (130-184)||(55300942-55300996)
[»] chr6 (2 HSPs)
chr6 (137-178)||(9515522-9515563)
chr6 (125-178)||(17312269-17312322)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 6274691 - 6274783
Alignment:
Q  38 cagtgtgagcaataaatatatctagttattaagaagaccaaattatatttgtccttggttaatttaatttcaaataataattttattatttgt 130  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  6274691 cagtgtgagcgataaatatatctacttattaagaagaccaaattatatttgtctttggttaatttaatttcaaataataattttatcatttgt 6274783  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 6274816 - 6274873
Alignment:
Q  125 atttgtatatggattttcaagcgtcaaatataaaattcatataaaaacatgagtaaat 182  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  6274816 atttatatatggattttcaagtgtcaaatctaaaattcatataaaaacatgagtaaat 6274873  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 6274645 - 6274673
Alignment:
Q  1 tacttacacaagctgatttcagtaacttt 29  Q
    |||||||||||||||||||||||||||||    
T  6274645 tacttacacaagctgatttcagtaacttt 6274673  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 44533718 - 44533666
Alignment:
Q  126 tttgtatatggattttcaagcgtcaaatataaaattcatataaaaacatgagt 178  Q
    |||| |||||||||||||||| |||||| |||||||||||| |||||||||||    
T  44533718 tttgcatatggattttcaagcatcaaatttaaaattcatatgaaaacatgagt 44533666  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 7282205 - 7282163
Alignment:
Q  131 atatggattttcaagcgtcaaatataaaattcatataaaaaca 173  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||    
T  7282205 atatgtattttcaagcatcaaataaaaaattcatataaaaaca 7282163  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 55300996 - 55300942
Alignment:
Q  130 tatatggattttcaagcgtcaaatataaaattcatataaaaacatgagtaaatga 184  Q
    |||||| |||||||||| ||| || ||||||||||||||||| |||||| |||||    
T  55300996 tatatgtattttcaagcatcatatctaaaattcatataaaaatatgagtgaatga 55300942  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 9515563 - 9515522
Alignment:
Q  137 attttcaagcgtcaaatataaaattcatataaaaacatgagt 178  Q
    |||||||||| |||||| |||||||||||| |||||||||||    
T  9515563 attttcaagcatcaaatctaaaattcatatgaaaacatgagt 9515522  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 17312269 - 17312322
Alignment:
Q  125 atttgtatatggattttcaagcgtcaaatataaaattcatataaaaacatgagt 178  Q
    |||| ||||||||||||||||| |  ||||||||| |||||| |||||||||||    
T  17312269 atttttatatggattttcaagcattgaatataaaactcatatgaaaacatgagt 17312322  T

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