View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2047_low_23 (Length: 232)
Name: NF2047_low_23
Description: NF2047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2047_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 1093630 - 1093433
Alignment:
| Q |
17 |
tatcagcattaccttctcatatcaataaaatcgaatgtcggattaaaaattaagaatctcatggaatttagaaacata--acaattgattgaagttagtt |
114 |
Q |
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| T |
1093630 |
tatcagcattaccttctcatttcaattaaatcgaatgtcggattaaaaattaagaatctcatggaatgtagaaacatataacaattgattgaagttagtt |
1093531 |
T |
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| Q |
115 |
tgtaaaatggtcataatcacatactcaataaacacatgcaagtaaagatgaatagttgtgcaagtaactcttgaaccttgtttgatacacactataac |
212 |
Q |
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| T |
1093530 |
tgtaaaatggtcataatcacatactcaataaacacatgcaagtaaagatgaatagttgtgcacgtaactcttgaaccttgtttgattcacactataac |
1093433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 1570767 - 1570574
Alignment:
| Q |
17 |
tatcagcattaccttctcatatcaataaaatcgaatgtcggattaaaaattaagaatctcatggaatttagaaac--ataacaattgattgaagttagtt |
114 |
Q |
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| T |
1570767 |
tatcagcattaccttctcatatcaatgaaacagaacataggattaaaaatttagaatctcatggaatgtagaaacatatagcaattgattaaaaccagtt |
1570668 |
T |
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| Q |
115 |
tgtaaaatggtcataatcacatactcaataaacacatgcaagtaaagatgaatagttgtgcaagtaactcttgaaccttgtttgatacacactataac |
212 |
Q |
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| T |
1570667 |
tgaaaaatgtttataatcatatactcaataaacacatgtaagtaaagatgaata----ttcatgtaactcttgaaccttgtttgattcacactttaac |
1570574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 1563135 - 1563212
Alignment:
| Q |
17 |
tatcagcattaccttctcatatcaataaaatcgaatgtcggattaaaaattaagaatctcatggaatttagaaacata |
94 |
Q |
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||||||||||||||| |||||||||| ||| ||| || |||||||||||| |||||||| |||||| ||||| |||| |
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| T |
1563135 |
tatcagcattaccttttcatatcaatgaaacagaacgtgggattaaaaatttagaatctcgtggaatgtagaatcata |
1563212 |
T |
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