View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2047_low_25 (Length: 231)

Name: NF2047_low_25
Description: NF2047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2047_low_25
NF2047_low_25
[»] chr7 (2 HSPs)
chr7 (6-100)||(37205057-37205151)
chr7 (181-213)||(37204948-37204980)
[»] chr5 (3 HSPs)
chr5 (23-95)||(16465055-16465127)
chr5 (23-95)||(16472011-16472083)
chr5 (30-80)||(24179611-24179661)
[»] chr2 (1 HSPs)
chr2 (28-96)||(12261627-12261695)
[»] chr4 (2 HSPs)
chr4 (30-98)||(7848053-7848121)
chr4 (48-98)||(52418098-52418148)
[»] chr3 (2 HSPs)
chr3 (3-82)||(5050158-5050237)
chr3 (54-98)||(36455559-36455603)
[»] scaffold0007 (1 HSPs)
scaffold0007 (49-98)||(190394-190443)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 37205151 - 37205057
Alignment:
Q  6 gtcgaagaatatgagcgtgacttgaattcttccatctttggtgagagtgagagttttgtttcaaaattgagagtgaggtagaaaaagaaaagaag 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37205151 gtcgaagaatgtgagcgtgacttgaattcttccatctttggtgagagtgagagttttgtttcaaaattgagagtgaggtagaaaaagaaaagaag 37205057  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 37204980 - 37204948
Alignment:
Q  181 caatcataaactcgtcatagactcgtgattcta 213  Q
    |||||||||||||||||||||||||||||||||    
T  37204980 caatcataaactcgtcatagactcgtgattcta 37204948  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 16465127 - 16465055
Alignment:
Q  23 tgacttgaattcttccatctttggtgagagtgagagttttgtttcaaaattgagagtgaggtagaaaaagaaa 95  Q
    |||| |||||||||  ||||||||||| |||||||| |||||||| |||||||||||||| | ||||||||||    
T  16465127 tgacctgaattcttgtatctttggtgaaagtgagagatttgtttctaaattgagagtgagatcgaaaaagaaa 16465055  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 16472083 - 16472011
Alignment:
Q  23 tgacttgaattcttccatctttggtgagagtgagagttttgtttcaaaattgagagtgaggtagaaaaagaaa 95  Q
    |||| |||||||||| || ||||||||||||||||| |||||||| ||||||||||||||   ||||||||||    
T  16472083 tgacctgaattcttctatttttggtgagagtgagagatttgtttctaaattgagagtgagaccgaaaaagaaa 16472011  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 24179611 - 24179661
Alignment:
Q  30 aattcttccatctttggtgagagtgagagttttgtttcaaaattgagagtg 80  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||| ||||    
T  24179611 aattcttctatctttggtgagggtgagagttttgtttctaaattgaaagtg 24179661  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 12261627 - 12261695
Alignment:
Q  28 tgaattcttccatctttggtgagagtgagagttttgtttcaaaattgagagtgaggtagaaaaagaaaa 96  Q
    |||||||||| |||||  |||||||||||||||||||||| |||||||||||||  | |||||||||||    
T  12261627 tgaattcttctatcttgagtgagagtgagagttttgtttctaaattgagagtgaaatcgaaaaagaaaa 12261695  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 7848121 - 7848053
Alignment:
Q  30 aattcttccatctttggtgagagtgagagttttgtttcaaaattgagagtgaggtagaaaaagaaaaga 98  Q
    |||||||| |||||| |||||||||||| ||||||||| |||| ||||||||| | |||||| ||||||    
T  7848121 aattcttctatctttcgtgagagtgagaattttgtttctaaatggagagtgagatcgaaaaataaaaga 7848053  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 52418098 - 52418148
Alignment:
Q  48 gagagtgagagttttgtttcaaaattgagagtgaggtagaaaaagaaaaga 98  Q
    |||||||||||||||||||  |||||||||||||| | |||||||||||||    
T  52418098 gagagtgagagttttgtttttaaattgagagtgagatcgaaaaagaaaaga 52418148  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 5050237 - 5050158
Alignment:
Q  3 gatgtcgaagaatatgagcgtgacttgaattcttccatctttggtgagagtgagagttttgtttcaaaattgagagtgag 82  Q
    ||||| || ||||||||| ||||| | |||||||| |||||| ||||||||||||||| | |||  ||||||||||||||    
T  5050237 gatgttgacgaatatgagtgtgaccttaattcttctatctttagtgagagtgagagttgtttttttaaattgagagtgag 5050158  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 36455559 - 36455603
Alignment:
Q  54 gagagttttgtttcaaaattgagagtgaggtagaaaaagaaaaga 98  Q
    ||||||||| |||| |||||||||||||| | |||||||||||||    
T  36455559 gagagttttatttctaaattgagagtgagatcgaaaaagaaaaga 36455603  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 190394 - 190443
Alignment:
Q  49 agagtgagagttttgtttcaaaattgagagtgaggtagaaaaagaaaaga 98  Q
    ||||||| ||||||||||| ||||||||| |||| | |||||||||||||    
T  190394 agagtgaaagttttgtttctaaattgagaatgagatcgaaaaagaaaaga 190443  T

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