View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2047_low_27 (Length: 219)
Name: NF2047_low_27
Description: NF2047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2047_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 11996755 - 11996869
Alignment:
| Q |
1 |
cattctttagctgactcatatgtttgtgttactgcccttctcaattcttcatcgggtaatgcctgcaagatgagaacaactcaaaaatcaaaacccttcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11996755 |
cattctttagctgactcatatgtttgtgttactgcccttctcaattcttcatcaggtagtgcctgcaagatgagaacaactcaaaaatcaaaacccttct |
11996854 |
T |
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| Q |
101 |
agattttcttaagac |
115 |
Q |
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|||| ||||||||| |
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| T |
11996855 |
agatactcttaagac |
11996869 |
T |
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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 11988043 - 11988137
Alignment:
| Q |
1 |
cattctttagctgactcatatgtttgtgttactgcccttctcaattcttcatcgggtaatgcctgcaagatgagaacaactcaaaaatcaaaacc |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||||| ||||||||| |
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| T |
11988043 |
cattctttagctgactcatatgtttgtgttactgcccttctcaattcttcatcaggtagtgcctgcaagatgagtataactcaaagatcaaaacc |
11988137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 11996957 - 11997044
Alignment:
| Q |
112 |
agactagtacttcacacatatcatatgtcattttcatatagtgaggtggtttattcacagggaagggagaaaaccaatgcttttactttg |
201 |
Q |
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| T |
11996957 |
agactagtacttctcatatatcat--gtcatttttatgtagcgaggtggtttattcataggaaagggagaaaaccaatgcttttactttg |
11997044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12008696 - 12008748
Alignment:
| Q |
1 |
cattctttagctgactcatatgtttgtgttactgcccttctcaattcttcatc |
53 |
Q |
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| T |
12008696 |
cattctttagctgactcaaatttttgtgttactgccgttttcaattcttcatc |
12008748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12013158 - 12013210
Alignment:
| Q |
1 |
cattctttagctgactcatatgtttgtgttactgcccttctcaattcttcatc |
53 |
Q |
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|||||||||||||||||| ||||||||||| | |||||||| |||||||||| |
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| T |
12013158 |
cattctttagctgactcaagtgtttgtgttattacccttctcgattcttcatc |
12013210 |
T |
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