View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2047_low_7 (Length: 369)
Name: NF2047_low_7
Description: NF2047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2047_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 35381628 - 35381289
Alignment:
| Q |
17 |
atcaagcgggtatattacgttggtaatcactaaatcattctccatggagaatacaaaatttgaaatgataaatgaaagagagagaaaaatacttgtgttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35381628 |
atcaagcgggtatattacgttggtaatcactaaatcattctccatggagaatacaaaatttgaaatgataaatgaaagagagaaaaaaatacttgtgttt |
35381529 |
T |
|
| Q |
117 |
tgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcataagcatatagca |
216 |
Q |
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| T |
35381528 |
tgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcataagcatatagca |
35381429 |
T |
|
| Q |
217 |
cattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatagatggaactaaga |
316 |
Q |
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| T |
35381428 |
cattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagtaaagcctaaacgtaattgatagatggaactaagt |
35381329 |
T |
|
| Q |
317 |
gtagttaaatctgtcaagtggaccacatctggtgactcct |
356 |
Q |
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| T |
35381328 |
gtagttaaatgtgttaagtggaccacatctggtgactcct |
35381289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 105 - 356
Target Start/End: Complemental strand, 35370973 - 35370722
Alignment:
| Q |
105 |
atacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcat |
204 |
Q |
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| T |
35370973 |
atacttgtcttttaaatcttggtataagccaacattgcaacttgagattcttgaaggagttgctttctaaaacaaaggcacgtccacaaatccaagtcat |
35370874 |
T |
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| Q |
205 |
aagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatag |
304 |
Q |
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||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
35370873 |
aagcatagagaacattgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgatag |
35370774 |
T |
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| Q |
305 |
atggaactaagagtagttaaatctgtcaagtggaccacatctggtgactcct |
356 |
Q |
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| T |
35370773 |
atggaattaaatgttgttaaatgtgttaagtggaccacatctggtgactcct |
35370722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 28 - 356
Target Start/End: Complemental strand, 35355608 - 35355275
Alignment:
| Q |
28 |
atattacgttggtaatcactaaatcattctccatggagaatacaaaatttgaaa--tgataaatga-aagag--agagaaaaatacttgtgttttgaatc |
122 |
Q |
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||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||| | | |||||| |||| ||| |||||||| |||||||| |||| |
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| T |
35355608 |
atattacattggtaatcactaaatcattctccaaggagaaaacaaaatctgaaaaatcacaaatgagaagaagaagaaaaaaatacctgtgttttaaatc |
35355509 |
T |
|
| Q |
123 |
ttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcataagcatatagcacattgt |
222 |
Q |
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|||||| || ||||| ||||||||| ||||||||||| |||||||||||||| ||||| ||||||| || |||||| || ||||||||| || ||||||| |
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| T |
35355508 |
ttggtataatccaactttgtaacttaagatcattgaaggtgttgctttctaaaacaaaggcacgtccacaaatccaagtgataagcatagagaacattgt |
35355409 |
T |
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| Q |
223 |
aaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatagatggaactaagagtagtt |
322 |
Q |
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||| ||||||||||| | ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| | |||||| || ||| ||| |||||| |
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| T |
35355408 |
aaatggccacattaagtgtagataccatttagatgtttgaggattggaagctaaggaagcaaagcctaaacgcatttgataaattgaatcaagtgtagtt |
35355309 |
T |
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| Q |
323 |
aaatctgtcaagtggaccacatctggtgactcct |
356 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||| |
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| T |
35355308 |
aaatgtgttaagtggaccacatctggtgactcct |
35355275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 105 - 356
Target Start/End: Complemental strand, 19685518 - 19685267
Alignment:
| Q |
105 |
atacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcat |
204 |
Q |
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||||||||||||| |||||||||| ||||||||| || | ||||||||| ||||| | ||| |||||||| ||||| |||| || ||||||||| |||| |
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| T |
19685518 |
atacttgtgttttaaatcttggtataagccaacactgcagcttgagatctttgaaggagttactttctaaaacaaaggcacttccactaatccaagtcaa |
19685419 |
T |
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| Q |
205 |
aagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatag |
304 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||| || |||||||| ||||||||||| ||||||||||| ||||||| |||||||||| |||| || |
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| T |
19685418 |
aagcatagagcacattgtaaaaggccacattaaattgagataccatttcgatgtttgagggttggaggctaaggaagcaagccctaaacgtagttgaaag |
19685319 |
T |
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| Q |
305 |
atggaactaagagtagttaaatctgtcaagtggaccacatctggtgactcct |
356 |
Q |
| |
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|||||| ||| || ||||||| ||| ||||| ||||||||||||||||||| |
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| T |
19685318 |
atggaatcaagtgttgttaaatgtgttaagtgcaccacatctggtgactcct |
19685267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 105 - 356
Target Start/End: Original strand, 19629133 - 19629384
Alignment:
| Q |
105 |
atacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcat |
204 |
Q |
| |
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|||||||| |||| |||||||||| ||||||||| || | ||||||||| ||||| ||| |||||||| |||| ||| | | ||||||||| |||| |
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| T |
19629133 |
atacttgtattttaaatcttggtataagccaacactgcagcttgagatctttgaagaagttactttctaaaacaatggcatgcccactaatccaagtcac |
19629232 |
T |
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| Q |
205 |
aagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatag |
304 |
Q |
| |
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||||||| |||||| |||||| ||||||||||||| || ||||||||||| |||||||| ||||||||||| |||||||| ||||| |||| |||| || |
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| T |
19629233 |
aagcatagagcacaatgtaaaaggccacattaaattgagataccatttagaagtttgagggttggaggctaaggaagcaaaccctaagcgtagttgaaag |
19629332 |
T |
|
| Q |
305 |
atggaactaagagtagttaaatctgtcaagtggaccacatctggtgactcct |
356 |
Q |
| |
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|| ||| ||| || ||||||| ||| ||||| |||||||||||||| |||| |
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| T |
19629333 |
atagaatcaagtgttgttaaatgtgttaagtgcaccacatctggtgattcct |
19629384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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