View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2047_low_8 (Length: 311)
Name: NF2047_low_8
Description: NF2047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2047_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 11928378 - 11928100
Alignment:
| Q |
13 |
aatattggtgatttctcttagattgagatatcgtaaacgtgtaagattcccaagttgaggagggatttctccattcaaaccataaaaacttttacttaaa |
112 |
Q |
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| T |
11928378 |
aatattggtgttctctcttagattgagatatcgtaaacgtgtaagattcccaagttgaggaggtatttctccattcaaaccataaaaacttttacttaaa |
11928279 |
T |
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| Q |
113 |
tctaaatactctagctctaaaagatttcctatttgataaggaattttcccaggaattacagaatacgataaattgagatattttaacttggcaagtgagc |
212 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||| | |||| | |
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| T |
11928278 |
tctaaatactctagctataaaagatttcctatttgataaggaattctcccgggaaatacagaaaacgataaattgagatattttaacttggtatgtgatc |
11928179 |
T |
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| Q |
213 |
ctatttgttctgaaatatggctgccaggnnnnnnnttagagctaagatccaaatattccatattttccaaggcaatcaa |
291 |
Q |
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| T |
11928178 |
ctatgtgttctgaaatatgtctgccaggaaatacattagagctaagatccaaatattccatattttccaagacaatcaa |
11928100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 26 - 291
Target Start/End: Complemental strand, 11962626 - 11962361
Alignment:
| Q |
26 |
tctcttagattgagatatcgtaaacgtgtaagattcccaagttgaggagggatttctccattcaaaccataaaaacttttacttaaatctaaatactcta |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || |||||||| | ||||| ||||| ||| || | |
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| T |
11962626 |
tctcttagattgagatatcgtaaacgtgtaagattcccgagttgagaagggatttctccttttgtaccataaaccatcccacttagatctagatattcaa |
11962527 |
T |
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| Q |
126 |
gctctaaaagatttcctatttgataaggaattttcccaggaattacagaatacgataaattgagatattttaacttggcaagtgagcctatttgttctga |
225 |
Q |
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| T |
11962526 |
gctctaaaagttttccaatttgataaggaatcctcccacgaggtaaagattctgagagattgagatactttaacttggtaagtgagcctatttgttctga |
11962427 |
T |
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| Q |
226 |
aatatggctgccaggnnnnnnnttagagctaagatccaaatattccatattttccaaggcaatcaa |
291 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
11962426 |
aatatggctgccaggaaaatcgttagagctaagatccaaatattccatattttgcaagacaatcaa |
11962361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 26 - 291
Target Start/End: Original strand, 11852925 - 11853190
Alignment:
| Q |
26 |
tctcttagattgagatatcgtaaacgtgtaagattcccaagttgaggagggatttctccattcaaaccataaaaacttttacttaaatctaaatactcta |
125 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| || | ||||||||| | | ||||| ||||| ||| || | |
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| T |
11852925 |
tctcttaggttgagatatcgtaaacgtgtaagattcccgagttgagaagggatttctccgtttataccataaaacatctcacttagatctagatattcaa |
11853024 |
T |
|
| Q |
126 |
gctctaaaagatttcctatttgataaggaattttcccaggaattacagaatacgataaattgagatattttaacttggcaagtgagcctatttgttctga |
225 |
Q |
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| T |
11853025 |
gatctaaaagttttccaatttgataaggaatcctcccaccaacaaaagaatttgagaaattgagatactttaacttggtaagtgagcctatttgttctga |
11853124 |
T |
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| Q |
226 |
aatatggctgccaggnnnnnnnttagagctaagatccaaatattccatattttccaaggcaatcaa |
291 |
Q |
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| T |
11853125 |
aaaaagattgccttgaaataaattatagctaagatccaaatattccatattttgcaagacaatcaa |
11853190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 11833661 - 11833719
Alignment:
| Q |
26 |
tctcttagattgagatatcgtaaacgtgtaagattcccaagttgaggagggatttctcc |
84 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
11833661 |
tctcttagattgagatatcgtaaacgtgtaagattcccgagttgagaagggatttctcc |
11833719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 291
Target Start/End: Original strand, 11833760 - 11833863
Alignment:
| Q |
188 |
agatattttaacttggcaagtgagcctatttgttctgaaatatggctgccaggnnnnnnnttagagctaagatccaaatattccatattttccaaggcaa |
287 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||| |||| ||| |
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| T |
11833760 |
agatactttaacttggtaagtgagcctatttgttctgaaatagaattgccttgaaataaattatggctaagatccaaatattccatattttgcaagacaa |
11833859 |
T |
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| Q |
288 |
tcaa |
291 |
Q |
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|||| |
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| T |
11833860 |
tcaa |
11833863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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