View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20480_high_1 (Length: 722)

Name: NF20480_high_1
Description: NF20480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20480_high_1
NF20480_high_1
[»] chr7 (2 HSPs)
chr7 (1-706)||(28469726-28470431)
chr7 (429-604)||(5229937-5230112)
[»] chr8 (4 HSPs)
chr8 (428-610)||(12811915-12812097)
chr8 (429-579)||(34830908-34831058)
chr8 (485-580)||(12772269-12772364)
chr8 (485-580)||(12791129-12791224)
[»] chr2 (3 HSPs)
chr2 (428-558)||(30642895-30643024)
chr2 (485-570)||(5546362-5546447)
chr2 (483-528)||(2115269-2115314)
[»] chr5 (1 HSPs)
chr5 (433-591)||(20543499-20543657)
[»] chr6 (1 HSPs)
chr6 (483-596)||(22611520-22611633)
[»] chr4 (2 HSPs)
chr4 (430-579)||(45671368-45671517)
chr4 (485-558)||(42506647-42506720)
[»] chr3 (1 HSPs)
chr3 (456-567)||(38396710-38396821)
[»] chr1 (1 HSPs)
chr1 (497-596)||(46039592-46039691)


Alignment Details
Target: chr7 (Bit Score: 603; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 1 - 706
Target Start/End: Original strand, 28469726 - 28470431
Alignment:
Q  1 acaactagagacataatacgattgatttagtcttaattgccgtttacaaagatataaaataaacaaacatcgatgtcacgagctagattgcgaccattga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28469726 acaactagagacataatacgattgatttagtcttaattgccgttg-caaagatataaaataaactaacatcgatgtcacgagctagattgcgaccattga 28469824  T
Q  101 cgtttctaaaatatattttactatcaaggatggttttaaattacggctgcacttacgctatatttcaacaaaatgccgagaaatgtgaccattgcgattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28469825 cgtttctaaaatatattttactatcaaggatggttttaaattacggctgaacttacgctatatttcaacaaaatgccgagaaatgtgaccattgcgattg 28469924  T
Q  201 aaattgtggtaacaaaacaggtacggagacgacaaattcctttgaagtttgtcgcaattatagttgtagaccgcaatttaaaaccacagtatctaatata 300  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  28469925 aaattgtggtaacaaaacaggtacggggacgacaaattcctttgaagtttgtcgcaattagagttgtagaccgcaatttaaaaccacactatctaatata 28470024  T
Q  301 cggggggtagagactaaagagtaactacttaaacaatatnnnnnnnnnnnnatttcgaatataaatacaaactttctgatcagttactgnnnnnnnn-ct 399  Q
     ||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||         ||    
T  28470025 gggggggtagagactaaagagtaactacttaaacaatatcacacacacacaatttcgaatataaatacaaactttctgatcagttactgtttttttttct 28470124  T
Q  400 agactcatagcagaagagagagtgataagaaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctca 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470125 agactcatagcagaagagagagtgataagaaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctca 28470224  T
Q  500 aaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagctttctg 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470225 aaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagctttctg 28470324  T
Q  600 aatttgcaagttcaacttcagggtacccttctctctctttttcattcatctaatattaaaaaatctcaccattaatttgctttgtgaaagtttctttaca 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470325 aatttgcaagttcaacttcagggtacccttctctctctttttcattcatctaatattaaaaaatctcaccattaatttgctttgtgaaagtttctttaca 28470424  T
Q  700 atttttt 706  Q
    |||||||    
T  28470425 atttttt 28470431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 429 - 604
Target Start/End: Original strand, 5229937 - 5230112
Alignment:
Q  429 aaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagc 528  Q
    |||||||||| ||||| || |||||  ||||||||||||| ||||| || ||| | |||||||| ||  | || |||||||||||| | || || |||||    
T  5229937 aaaaaatgggaagaggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagc 5230036  T
Q  529 ctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagctttctgaattt 604  Q
     |||||||| || ||||| |||||||||||| ||||||||||||| ||||| | |||||||||||||| |||||||    
T  5230037 ttatgaactttctgttctttgtgatgctgaggttgctcttatcatcttctccactcgtggaaagctttatgaattt 5230112  T

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Target: chr8 (Bit Score: 83; Significance: 6e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 428 - 610
Target Start/End: Complemental strand, 12812097 - 12811915
Alignment:
Q  428 gaaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaag 527  Q
    ||||||||||| ||||| || |||||| ||||||| ||||| |||||||| |||||||| || ||||||||||||||||||||||||||||| || ||||    
T  12812097 gaaaaaatgggaagaggaagagttgaattgaagagaatagagaacaaaataaaccggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaag 12811998  T
Q  528 cctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagctttctgaatttgcaagt 610  Q
    | |||||||| || ||||| |||||||||||  |||| |||||||||||||| || ||||| || || | |||||||| ||||    
T  12811997 cttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactctatgaatttggaagt 12811915  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 429 - 579
Target Start/End: Complemental strand, 34831058 - 34830908
Alignment:
Q  429 aaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagc 528  Q
    |||||||||| ||||| || |||||  ||||||| || || |||||||||||| | |||||||| ||| | ||| |||| || ||| |  ||||||||||    
T  34831058 aaaaaatgggaagaggaagagttgagttgaagagaattgagaacaaaatcaacagacaagttaccttcgctaaacgaaggaacggtcttttgaaaaaagc 34830959  T
Q  529 ctatgaactctcagttctatgtgatgctgagattgctcttatcattttctc 579  Q
     |||||||| || ||||| |||||||||||  ||||||||||||| |||||    
T  34830958 ttatgaactttctgttctttgtgatgctgaagttgctcttatcatcttctc 34830908  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 580
Target Start/End: Original strand, 12772269 - 12772364
Alignment:
Q  485 caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctca 580  Q
    ||||| || |||||||| ||||||||||||||| |||| || |||| |||||| |||||  |||||||||||||| ||||||||||  ||||||||    
T  12772269 caagtaacattctcaaagagaagaaatggtttgttgaagaaggcctttgaactgtcagtgttatgtgatgctgaggttgctcttattgttttctca 12772364  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 580
Target Start/End: Original strand, 12791129 - 12791224
Alignment:
Q  485 caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctca 580  Q
    ||||| || |||||||| ||||||||||||||| |||| || |||| |||||| |||||  |||||||||||||| ||||||||||  ||||||||    
T  12791129 caagtaacattctcaaagagaagaaatggtttgttgaagaaggcctttgaactgtcagtgttatgtgatgctgaggttgctcttattgttttctca 12791224  T

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Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 428 - 558
Target Start/End: Complemental strand, 30643024 - 30642895
Alignment:
Q  428 gaaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaag 527  Q
    ||||||||||| ||||| || |||||| ||||||| ||||| |||||||| |||| |||||  ||||||||||| ||||||||||||||||| |||||||    
T  30643024 gaaaaaatgggaagaggaagagttgaattgaagagaatagagaacaaaataaaccagcaagcaactttctcaaagagaagaaatggtttgctcaaaaaag 30642925  T
Q  528 cctatgaactctcagttctatgtgatgctga 558  Q
    | |||||||| || ||||  |||||||||||    
T  30642924 cttatgaactgtctgttc-ctgtgatgctga 30642895  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 570
Target Start/End: Original strand, 5546362 - 5546447
Alignment:
Q  485 caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttat 570  Q
    ||||| |||||||  |||||||||||||||||| |||| ||||| |||||| | || ||||| |||||||| ||  ||||||||||    
T  5546362 caagtaactttctgcaaaagaagaaatggtttgttgaagaaagcatatgaattatctgttctttgtgatgcagaagttgctcttat 5546447  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 483 - 528
Target Start/End: Original strand, 2115269 - 2115314
Alignment:
Q  483 ggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagc 528  Q
    ||||||| ||||||||||||||||||||||| ||| |||| |||||    
T  2115269 ggcaagtgactttctcaaaaagaagaaatggattgttgaagaaagc 2115314  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 433 - 591
Target Start/End: Complemental strand, 20543657 - 20543499
Alignment:
Q  433 aatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctat 532  Q
    ||||||||| || | ||| || || |||||||| || |||||||| || || |||||||| ||  |||| |||||||||||  ||||||| || || |||    
T  20543657 aatgggtaggggaaaggtagagctaaagaggattgagaacaaaataaatcgtcaagttacatttgcaaagagaagaaatggaatgctgaagaaggcttat 20543558  T
Q  533 gaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaa 591  Q
    ||||||||  | || |||||||||||| ||||||| || |||||||| || ||||||||    
T  20543557 gaactctctctcctttgtgatgctgaggttgctctcattattttctctagccgtggaaa 20543499  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 483 - 596
Target Start/End: Original strand, 22611520 - 22611633
Alignment:
Q  483 ggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaag 582  Q
    ||||||| || |||||||| ||||||| ||| ||| |||| ||||||| ||| || |  |||||||||||||||||  |||| ||||||||||| |||||    
T  22611520 ggcaagtaacattctcaaagagaagaagtggattgttgaagaaagcctttgagctttgtgttctatgtgatgctgaagttgcacttatcattttttcaag 22611619  T
Q  583 tcgtggaaagcttt 596  Q
     ||||| |||||||    
T  22611620 ccgtggcaagcttt 22611633  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 430 - 579
Target Start/End: Original strand, 45671368 - 45671517
Alignment:
Q  430 aaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcc 529  Q
    ||||||||| |||||||| |||||||| ||||| ||||| |||||| | ||  | ||||| || ||  | || |||||||||||| | || || || ||     
T  45671368 aaaaatgggaagagggagagttgaactaaagagaatagagaacaaagttaatagacaagtcacatttgctaagagaagaaatggtgtactcaagaaggct 45671467  T
Q  530 tatgaactctcagttctatgtgatgctgagattgctcttatcattttctc 579  Q
    |||||||| |||||||| |||||||||||  ||||||||||||| |||||    
T  45671468 tatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctc 45671517  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 558
Target Start/End: Complemental strand, 42506720 - 42506647
Alignment:
Q  485 caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctga 558  Q
    ||||| ||||||||||| |||||||||||  |||| ||||| |||| |||||| ||||| || |||||||||||    
T  42506720 caagtaactttctcaaagagaagaaatggactgcttaaaaaggcctttgaactttcagtgctttgtgatgctga 42506647  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 456 - 567
Target Start/End: Original strand, 38396710 - 38396821
Alignment:
Q  456 tgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgc 555  Q
    ||||||| || || ||||| |||||| | |||||||| ||  ||||| ||||||||||| |  |||||||||| |||||||| || ||||| ||||||||    
T  38396710 tgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactttctgttctttgtgatgc 38396809  T
Q  556 tgagattgctct 567  Q
     ||| |||||||    
T  38396810 agaggttgctct 38396821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 497 - 596
Target Start/End: Complemental strand, 46039691 - 46039592
Alignment:
Q  497 tcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagcttt 596  Q
    ||||| ||||||| ||||||| |||| ||||| | |||||| || ||  |||||||||||||  ||||||||||||| ||||| |||| ||| |||||||    
T  46039691 tcaaagagaagaagtggtttgttgaagaaagcttttgaactttctgtgttatgtgatgctgaagttgctcttatcatcttctccagtcttggcaagcttt 46039592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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