View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20480_high_5 (Length: 461)
Name: NF20480_high_5
Description: NF20480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20480_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 7e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 1814658 - 1814446
Alignment:
| Q |
18 |
agatgcaatatacatttagaaaatttgaagatatagaaatcactaaccatgagcgtcaaacgataatcattcacttgctttcatagttgaacgcatcact |
117 |
Q |
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| T |
1814658 |
agatgcaatatacatttagaaaatttgaagatatagaaatcactaaccagtagcgtcaaacgataatcactcacttgctttcatagttgaatgcgccgct |
1814559 |
T |
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| Q |
118 |
gatgcaaaagtttcgaatcaccttttatagacaaagtttcaaacatgcaggaacctcctgcaaatgtaatgggagaagacacatcagaaccttggtaatc |
217 |
Q |
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||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1814558 |
gatacaaaagtttcaaatcaccttttatggacaaagtttcaaacatgcaggaacctcctgcaaatgtaatgggagaagacacatcagaaccttggtaatc |
1814459 |
T |
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| Q |
218 |
aagtcatggtgat |
230 |
Q |
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||||||||||||| |
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| T |
1814458 |
aagtcatggtgat |
1814446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 28 - 230
Target Start/End: Complemental strand, 1830297 - 1830095
Alignment:
| Q |
28 |
tacatttagaaaatttgaagatatagaaatcactaaccatgagcgtcaaacgataatcattcacttgctttcatagttgaacgcatcactgatgcaaaag |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||| ||| ||||||| |||||| |
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| T |
1830297 |
tacatttagaaaatttgaagatatagaaatcactaaccagtagcggcaaactataatcactcacttgctttcatagttgaatgcaccactgatacaaaag |
1830198 |
T |
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| Q |
128 |
tttcgaatcaccttttatagac-aaagtttcaaacatgcaggaacctcctgcaaatgtaatgggagaagacacatcagaaccttggtaatcaagtcatgg |
226 |
Q |
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| T |
1830197 |
tttcaaatcaccttttagggacaaaagtttcaaacatgca-gaacctcctgcaaatgtaataggagaaaacacagcagaaccttggtaatcaagtcatgg |
1830099 |
T |
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| Q |
227 |
tgat |
230 |
Q |
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|||| |
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| T |
1830098 |
tgat |
1830095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 298 - 447
Target Start/End: Complemental strand, 1814378 - 1814229
Alignment:
| Q |
298 |
tgaggggacaaggacaatttctagtttcagtttattgcttaactcaccaattttggaatataacagtggattagcatataagtgagcatatcaaagcacn |
397 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1814378 |
tgaggggacaaggacaatttctagttgcagtttattgcttaactcaccaatgttggaatataacagtggattagcatataagtgagcatatcaaagcaca |
1814279 |
T |
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| Q |
398 |
nnnnnnnggagtttataaaaaagataacaaccaaccacaagtcacctatg |
447 |
Q |
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| T |
1814278 |
aaaaaaaggagtttataaaaaagataacaaccaaccacaagtcacctatg |
1814229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 446
Target Start/End: Complemental strand, 1829526 - 1829490
Alignment:
| Q |
410 |
ttataaaaaagataacaaccaaccacaagtcacctat |
446 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
1829526 |
ttataacaaagataacaaccaaccacaagtcacctat |
1829490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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