View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20480_high_7 (Length: 430)
Name: NF20480_high_7
Description: NF20480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20480_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 35042804 - 35042413
Alignment:
| Q |
19 |
taatgcattttgttaaaaat-taagagaaaagtatctcattgacttacggggttgacctggtagta---taagcttgagacaaacaaatgtgcttctttt |
114 |
Q |
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| T |
35042804 |
taatgcattttgttaaaaaaataagagataactatctcattgacttacagg-ttgacctagtagtagtgtaagcttgagacacacgagtgtacttctttt |
35042706 |
T |
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| Q |
115 |
taggtctttaagtttgaattctttttgtgctaacaattcattcgttggatcaatcgatgcaaaattttaacctgacttcaactaannnnnnntcttgtgg |
214 |
Q |
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||| |||| ||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||||| |||||||| |
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| T |
35042705 |
tagatctt-aagtttgaattctttttgtgctaacaattcatttgttagatcaattgatgtaaaattttaacctgacttcaactaaccccccctcttgtgg |
35042607 |
T |
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| Q |
215 |
gaagcatgattggttctttggattagtcggttccaagatcatataccgagtttttaaaacaggataaatatatcaatataaaatcaagtgcaataattat |
314 |
Q |
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|||||||||||||||| || | ||||||||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
35042606 |
gaagcatgattggttccttagcttagtcggttcttagatcatataccaagtttctaaaacatgataaatatatcaatataaaagcaagtgcaataattat |
35042507 |
T |
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| Q |
315 |
gaatggccacatttgcttagttatgaacaatt-----gatttgactcatagcaaacttcatgtgtgaattgtgattggttcaatgtttcccact |
403 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35042506 |
gaatggccacatttgcttagttatgaacaattatattgacttgactcatagcaaacttcatgtgtgaattgtgattggttcaatgtttcccact |
35042413 |
T |
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