View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20480_low_10 (Length: 409)

Name: NF20480_low_10
Description: NF20480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20480_low_10
NF20480_low_10
[»] chr3 (10 HSPs)
chr3 (73-409)||(1608368-1608706)
chr3 (73-409)||(1631858-1632194)
chr3 (105-409)||(1625375-1625676)
chr3 (130-409)||(10818404-10818687)
chr3 (73-222)||(1614032-1614182)
chr3 (16-77)||(1632240-1632301)
chr3 (16-77)||(10818286-10818347)
chr3 (19-77)||(1625753-1625811)
chr3 (16-77)||(1608752-1608813)
chr3 (16-77)||(1614228-1614289)
[»] chr7 (2 HSPs)
chr7 (84-409)||(18786316-18786648)
chr7 (19-77)||(18786704-18786762)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 73 - 409
Target Start/End: Complemental strand, 1608706 - 1608368
Alignment:
Q  73 attaattctttcttgcaattcaatccaccgtctgtatctgtgtcatttttcattatcacttgcaattcattccacacgttttcaccttcacactccgcct 172  Q
    ||||||||||||||||| ||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1608706 attaattctttcttgcatttgcatccactgtctgtatctgtgtcatttttcattatcacttgcaattcattccacacgttttcaccttcacactccgcct 1608607  T
Q  173 acaaaaatttatgtatatatatgctcatatag----tagc--ttaattctcataagtcaaaaccaaaaacaagtgaacaaaaacatcatatatcacacat 266  Q
    ||||||||||||||||||||||    ||||||    |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1608606 acaaaaatttatgtatatatat----atatagagtttagggtttaattctcataagtcaaaaccaaaaacaagtgaacaaaaacatcatatatcacacat 1608511  T
Q  267 ttgttatatgcaacataaactcttattattttttaaactcttcaattattctacaattgaattatggcaatcattggaaaaacattgttcatgctctttt 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1608510 ttgttatatgcaacataaactcttattattttttaaactcttcaattattctacaattgaattatggcaatcattggaaaaacattgtttatgctctttt 1608411  T
Q  367 tcttatcatcaattttctcaatagcctcatcaagaaaaggacc 409  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1608410 tcttatcatcaattttctcaatagcctcatcaagaaaaggacc 1608368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 73 - 409
Target Start/End: Complemental strand, 1632194 - 1631858
Alignment:
Q  73 attaattctttcttgcaattcaatccaccgtctgtatctgtgtcatttttcattatcacttgcaattcattccacacgttttcaccttcacactccgcct 172  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1632194 attaattctttcttgcaattgcatccaccgtctgtatctgtgtcatttttcattatcacttgcaattcattccacacgtttacaccttcacactccgcct 1632095  T
Q  173 acaaaaatttatgtatatatatgctca-tatagtagcttaattctcataagtcaaaaccaaaaacaagtgaacaaaaacatcatatatcacacatttgtt 271  Q
    ||||||||||||||||||||||    | | |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1632094 acaaaaatttatgtatatatatagagagtttagg-gtttaattctcataagtcaaaaccaaaaacaagtgaacaaaaacatcatatatcacacatttgtt 1631996  T
Q  272 atatgcaacataaactcttattattttttaaactcttcaattattctacaattgaattatggcaatcattggaaaaacattgttcatgctctttttctta 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1631995 atatgcaacataaactcttattattttttaaactcttcaattattctacaattgaattatggcaatcattggaaaaacattgtttatgctctttttctta 1631896  T
Q  372 tcatcaattttctcaatagcctcatcaagaaaaggacc 409  Q
    |||||||||||||||| |||||||||||||||||||||    
T  1631895 tcatcaattttctcaacagcctcatcaagaaaaggacc 1631858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 105 - 409
Target Start/End: Complemental strand, 1625676 - 1625375
Alignment:
Q  105 tgtatctgtgtcatttttcattatcacttgcaattcattccacacgttttcaccttcacactccgcctacaaaaatttatgtatatatatgctcatatag 204  Q
    ||||||||||||||| ||||||||||||| || ||||||||||||||||  ||||| ||||||  || ||||||||| |||||||||||||| ||||||     
T  1625676 tgtatctgtgtcattcttcattatcactttcagttcattccacacgtttcaacctttacactctaccgacaaaaatt-atgtatatatatgcacatatat 1625578  T
Q  205 -tagcttaattctcataagtcaaaaccaaaaacaagtgaacaaaaacatcatatat-cacacatttgttatatgcaacataaactcttattattttttaa 302  Q
     ||| ||||||||||||||||||| |||||||||||| ||| ||| |||||| ||| |||||||||||||||||||||||||||||||    | ||| ||    
T  1625577 atagattaattctcataagtcaaatccaaaaacaagtcaactaaagcatcatttatacacacatttgttatatgcaacataaactctt----tatttcaa 1625482  T
Q  303 actcttcaattattctacaattgaattatggcaatcattggaaaaacattgttcatgctctttttcttatcatcaattttctcaatagcctcatcaagaa 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||| |||| ||||||||||| ||||||||||||||||    
T  1625481 actcttcaattattctacaattgaattatggcaatcattggaaaaacattatttatgctcgttttcgtatcttcaattttctccatagcctcatcaagaa 1625382  T
Q  403 aaggacc 409  Q
    |||||||    
T  1625381 aaggacc 1625375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 130 - 409
Target Start/End: Original strand, 10818404 - 10818687
Alignment:
Q  130 acttgcaattcattccacacgttttcac-cttcacactccgcctacaaaaatttatgtatatatatgctcatatagtagcttaattctcataagtcaaaa 228  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||  || |||||||   |||||||||||||||||||||    
T  10818404 acttgcaattcattccacacgttttcacacttcacactccacctacaaaaatttaagtatatat--gcacatatag---cttaattctcataagtcaaaa 10818498  T
Q  229 ccaaaaacaagtgaacaaaaacatcatatat--------cacacatttgttatatgcaacataaactcttattat-tttttaaactcttcaattattcta 319  Q
    |||||||||||||||||||||||| || |||        | ||||||||| |||||||||| |||||||||||   ||||||||||||||||||||||||    
T  10818499 ccaaaaacaagtgaacaaaaacataatctatagtctatactcacatttgt-atatgcaacacaaactcttatttcatttttaaactcttcaattattcta 10818597  T
Q  320 caattgaattatggcaatcattggaaaaacattgttcatgctctttttcttatcatcaattttctcaatagcctcatcaagaaaaggacc 409  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||| || ||||||||||||| ||||||||||||||||||    
T  10818598 caattgaattatggcaatcattggaaaaacatggttcgtgctctttttcttatcttccattttctcaatagtctcatcaagaaaaggacc 10818687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 1614182 - 1614032
Alignment:
Q  73 attaattctttcttgcaattcaatccaccgtctgtatctgtgtcatttttcattatcacttgcaattcattccacacgttttca-ccttcacactccgcc 171  Q
    |||||||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  1614182 attaattctttcttgctattgcatccactgtctgtatctgtgtcatttttcattatcacttgcaattcattccaaacgttttcacccttcacactccgcc 1614083  T
Q  172 tacaaaaatttatgtatatatatgctcatatagtagcttaattctcataag 222  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1614082 tacaaaaatttatgtatatatatgcacatatagtagcttaattctcataag 1614032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 1632301 - 1632240
Alignment:
Q  16 attaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaattattaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1632301 attaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaattgttaa 1632240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 10818286 - 10818347
Alignment:
Q  16 attaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaattattaa 77  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10818286 attaggacacttgtttttcttgcaataacaagtaattaggcttcaactttctgaattattaa 10818347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 1625811 - 1625753
Alignment:
Q  19 aggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaattattaa 77  Q
    |||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||    
T  1625811 aggacacttgtttttcttgcaatatcaagtaattaggctccaactttctgaattattaa 1625753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 1608813 - 1608752
Alignment:
Q  16 attaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaattattaa 77  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||    
T  1608813 attaagacacttgtttttcttgcaataacaagtaatttggcttcaactttctggattattaa 1608752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 1614289 - 1614228
Alignment:
Q  16 attaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaattattaa 77  Q
    ||||| |||||||||||||||||| | |||||||||| ||||||||||||||| ||||||||    
T  1614289 attagcacacttgtttttcttgcactaacaagtaatttggcttcaactttctggattattaa 1614228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 84 - 409
Target Start/End: Complemental strand, 18786648 - 18786316
Alignment:
Q  84 cttgcaattcaatccaccgtctgtatctgtgtcatttttcattatcacttgcaattcattccacacgttttca-ccttcacactccgcctacaaaaattt 182  Q
    ||||||||| ||| ||  || ||||||||||||||| ||||||||||||| || |||||| |||| ||||||| |||||||||||| |||||||||  |     
T  18786648 cttgcaattgaattcatagtttgtatctgtgtcattcttcattatcactttcagttcatttcacatgttttcaaccttcacactccacctacaaaatatc 18786549  T
Q  183 atgtata--tatatgctcatatagtagcttaattctcataagtcaaaaccaaaaa-----caagtgaacaaaaacatcatatat-cacacatttgttata 274  Q
    | |||||  ||||||| |||||||   |||| |||| |||||||||||||||| |     ||||| ||||||| |||||| ||| |||||||||||| ||    
T  18786548 acgtataaatatatgcacatatag---cttatttcttataagtcaaaaccaaatataatccaagtcaacaaaagcatcatctatgcacacatttgtttta 18786452  T
Q  275 tgcaacataaactcttattattttttaaactcttcaattattctacaattgaa-ttatggcaatcattggaaaaacattgttcatgctctttttcttatc 373  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  18786451 tgcaacataaactcttgttattttttaaaatcttcaattattctacaactgaaattatggcaatcattggaaaaacattgtttatgctctttttcttatc 18786352  T
Q  374 atcaattttctcaatagcctcatcaagaaaaggacc 409  Q
     |||||||||||||||||||||||||||||||||||    
T  18786351 ttcaattttctcaatagcctcatcaagaaaaggacc 18786316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 18786762 - 18786704
Alignment:
Q  19 aggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaattattaa 77  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  18786762 aggacacttgtttttcttgcaataacaagtaattaggctccaactttctgaattattaa 18786704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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