View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20480_low_13 (Length: 327)
Name: NF20480_low_13
Description: NF20480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20480_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 59 - 312
Target Start/End: Complemental strand, 42484456 - 42484203
Alignment:
| Q |
59 |
tttaatatactatagtagattatttatatttatttgacgattaagacactatagaatatacatataggtataggtaccaaaattaaatattgaaattaga |
158 |
Q |
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| T |
42484456 |
tttaatatactatagtagattatttatatttatttgacgattaagacactatagaatatacatataggtataggtaccaaaattaaatattgaaattaga |
42484357 |
T |
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| Q |
159 |
aaattgactgttcaaggtgatgatgtgtgttcccattcagagggaaggtgcgattgtgacagataaaattgaagtgtatatactaagtacgattttcaca |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42484356 |
aaattgactgttcaaggtgatgatgtgtgttcccattcagagggaaggtgcgattgtgacagataaaattgaagtgtatatactaagtacgattttcaca |
42484257 |
T |
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| Q |
259 |
ttcttccatagataagatatggtggaagatattctcaatcaaaaaggaggtggt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42484256 |
ttcttccatagataagatatggtggaagatattctcaatcaaaaaggaggtggt |
42484203 |
T |
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