View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20480_low_14 (Length: 303)

Name: NF20480_low_14
Description: NF20480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20480_low_14
NF20480_low_14
[»] chr3 (1 HSPs)
chr3 (22-303)||(3433617-3433898)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 303
Target Start/End: Complemental strand, 3433898 - 3433617
Alignment:
Q  22 agaagtctcgcattaaattcctctcgagcaaaatttttatattgaattagaaaatgaaacatataagcaagagaaaccataaccctaatgctttaggatt 121  Q
    |||||||||| ||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  3433898 agaagtctcgtattgaattcctctcgagcaaaattttcacattgaattagaaaatgaaacatataagcaagagaaaccataaccctgatgctttagggtt 3433799  T
Q  122 ttggatggagatgtgatcatgtctctctgtcacgcacatgtgtgattgcttttaatcaaatttgaatgattctctggactccctttacaatccaactctt 221  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||    
T  3433798 ttgaatggagatgtgatcatgtctctctgtcactcacatgtgtgattgcttttaatcaaatatgaatgattctccggactccctttacaatccaacactt 3433699  T
Q  222 attgctaaaattagcgactaattgtttatcaacatttcacaaattggtctgcaaatcggtcataaatcttacttggttgatc 303  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| |||||||||||||||||||    
T  3433698 attgctaaaattagcgactaattgtttaccaacgtttcacaaattggtctccaaatcggtcacaaatcttacttggttgatc 3433617  T

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