View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20480_low_16 (Length: 274)

Name: NF20480_low_16
Description: NF20480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20480_low_16
NF20480_low_16
[»] chr5 (6 HSPs)
chr5 (19-262)||(7141572-7141815)
chr5 (29-243)||(7154361-7154575)
chr5 (113-260)||(7131850-7131997)
chr5 (56-201)||(41305312-41305457)
chr5 (59-120)||(31177694-31177755)
chr5 (107-195)||(41337787-41337875)
[»] chr3 (1 HSPs)
chr3 (59-201)||(22986265-22986407)
[»] chr8 (1 HSPs)
chr8 (41-204)||(23610187-23610350)
[»] chr6 (2 HSPs)
chr6 (124-203)||(12425274-12425353)
chr6 (126-203)||(12268332-12268409)
[»] chr4 (1 HSPs)
chr4 (124-203)||(55954947-55955026)
[»] chr2 (1 HSPs)
chr2 (158-203)||(41795747-41795792)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 7141815 - 7141572
Alignment:
Q  19 caaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141815 caaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatca 7141716  T
Q  119 atcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatttataaagactgtagtat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7141715 atcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcatttataaagactgtagtat 7141616  T
Q  219 tttttggtatatcatacccatctattttggttagttctgtgctc 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7141615 tttttggtatatcatacccatctattttggttagttctgtgctc 7141572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 29 - 243
Target Start/End: Complemental strand, 7154575 - 7154361
Alignment:
Q  29 ataacacttgctaaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactat 128  Q
    |||||||| |||| |||||| | ||| || ||||||||||| |||||||| || |||||||| ||||| || |||||||||||||||||||||||||||     
T  7154575 ataacactagctataccaaatgacatgcctggacacattcttcttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactac 7154476  T
Q  129 catcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatttataaagactgtagtattttttggtat 228  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||  ||||||||| | | ||||||||||||||| |  ||| ||||||||||||||||    
T  7154475 catcaaacctctctggaatgaacatctcagcatcagtccaatattgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtat 7154376  T
Q  229 atcatacccatctat 243  Q
     ||||| ||||||||    
T  7154375 ttcataaccatctat 7154361  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 113 - 260
Target Start/End: Complemental strand, 7131997 - 7131850
Alignment:
Q  113 aaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatttataaagactg 212  Q
    ||||||||  ||||| | ||||| ||||||||| ||||| ||||||||||| ||||||||| |||||| ||| | || |||||| |||| || | ||||     
T  7131997 aaatcaatagaactaccttcaaatctctctggattaaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactt 7131898  T
Q  213 tagtattttttggtatatcatacccatctattttggttagttctgtgc 260  Q
    |||| ||||||||||||||||| ||||| || ||||||| ||| ||||    
T  7131897 tagtcttttttggtatatcataaccatcaatgttggttaattcagtgc 7131850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 41305457 - 41305312
Alignment:
Q  56 cccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctct 155  Q
    ||||||||||| ||||||||||| || || || ||||| || ||||   | ||||||||||||||  | |||| | |||||||||| ||  |||| ||||    
T  41305457 cccggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactct 41305358  T
Q  156 cagcatcattccaatatttaggatctcttcctattgcccatgcatt 201  Q
    |||| |||  |||||| || ||||||||||| || ||||| |||||    
T  41305357 cagcttcaacccaatactttggatctcttccaatcgcccaagcatt 41305312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 31177694 - 31177755
Alignment:
Q  59 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaat 120  Q
    ||||||||||| |||||||| ||||| || |||||||| |||||  | ||||||||||||||    
T  31177694 ggacacattcttcttccagcaccgaacggtatgtactcaaagtttgtacctttgaaatcaat 31177755  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 41337875 - 41337787
Alignment:
Q  107 cctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgccca 195  Q
    ||||||||||||||  | |||| | |||||||||| ||  |||| |||||||| |||  |||||| || ||||||||||| ||||||||    
T  41337875 cctttgaaatcaattgagctattaacaaacctctcaggtttaaaactctcagcttcaacccaatactttggatctcttccaattgccca 41337787  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 22986265 - 22986407
Alignment:
Q  59 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcag 158  Q
    ||||| |||||||||||||| || || ||||||||||| || ||| ||||||||||||||||  ||||||||  ||||||||| |||  |||| | || |    
T  22986265 ggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaacttatcgg 22986364  T
Q  159 catcattccaatatttaggatctcttcctattgcccatgcatt 201  Q
      |||||||||||||||||||| | ||| || ||||| |||||    
T  22986365 ggtcattccaatatttaggatcccgtccaatggcccaagcatt 22986407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 23610187 - 23610350
Alignment:
Q  41 aaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctct 140  Q
    |||||| || |||| || ||||| |||||||| ||||| || || |||||| |||| || ||| |||||  |||||||||  | ||||||  |||||| |    
T  23610187 aaaccatagttcatgccgggacaaattctcctaccagcaccaaatggaatgaactcaaaattagttcctgagaaatcaatagagctatcaataaaccttt 23610286  T
Q  141 ctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatttat 204  Q
    | |||  |||| | || |  |||||||||||||||||||| |||||||||||||| ||||||||    
T  23610287 caggataaaacttatctgggtcattccaatatttaggatcccttcctattgcccaagcatttat 23610350  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 12425274 - 12425353
Alignment:
Q  124 actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 203  Q
    |||||||| ||||||||| || |||||| |||||||||||  ||||| ||  ||||||||||| ||||||||||||||||    
T  12425274 actatcatgaaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccatgcattta 12425353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 12268409 - 12268332
Alignment:
Q  126 tatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 203  Q
    |||||| ||||||||| || |||||| |||| ||||||  |||||  || ||||||||||| ||||||||||||||||    
T  12268409 tatcatgaaacctctcaggtataaacttctctgcatcagaccaatgattgggatctcttccaattgcccatgcattta 12268332  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 55954947 - 55955026
Alignment:
Q  124 actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 203  Q
    |||||||| |||||| || || |||||| |||  ||||||| ||||| ||| ||||||||||| ||||||||||||||||    
T  55954947 actatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcattta 55955026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 41795747 - 41795792
Alignment:
Q  158 gcatcattccaatatttaggatctcttcctattgcccatgcattta 203  Q
    |||||||  |||||||| ||||||||||| ||||||||||||||||    
T  41795747 gcatcatatcaatatttgggatctcttccgattgcccatgcattta 41795792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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