View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20480_low_18 (Length: 219)
Name: NF20480_low_18
Description: NF20480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20480_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 8073037 - 8072853
Alignment:
| Q |
18 |
aagaaggaaataaaatatacatcaaattaaatattgtttgctattgtttccaaaaggtttcttgagcctgaaaatttgaagccttgtcttcctagcttga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8073037 |
aagaaggaaataaaatatacatcaaattaaatattgtttgctattgtttccaaaaggtttcttgagcctgaaaatttgaagccttgtcttcctagcttga |
8072938 |
T |
|
| Q |
118 |
gctgctgccaaaactctatttgttgtagtttcatcgaactgttgatacgaggccgcgtcgatcaactcttctgctgttgagttca |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8072937 |
gctgctgccaaaactctatttgttgtagtttcatcgaactgttgatacgaggccgcgtcgatcaactcttctgctgttgagttca |
8072853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 8069427 - 8069323
Alignment:
| Q |
21 |
aaggaaataaaatatacatcaaattaaatattgtttgctattgtttccaaaaggtttcttgagcctgaaaatttgaagccttgtcttcctagcttgagct |
120 |
Q |
| |
|
|||||||||||||| |||||||| | ||| |||||| || ||||||||||||||||| ||||||||||| | ||||||||| | | ||||||||||||| |
|
|
| T |
8069427 |
aaggaaataaaataaacatcaaaatgaatgttgtttactcttgtttccaaaaggttttttgagcctgaatttctgaagccttctttgcctagcttgagct |
8069328 |
T |
|
| Q |
121 |
gctgc |
125 |
Q |
| |
|
||||| |
|
|
| T |
8069327 |
gctgc |
8069323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University