View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20480_low_2 (Length: 722)
Name: NF20480_low_2
Description: NF20480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20480_low_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 603; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 1 - 706
Target Start/End: Original strand, 28469726 - 28470431
Alignment:
| Q |
1 |
acaactagagacataatacgattgatttagtcttaattgccgtttacaaagatataaaataaacaaacatcgatgtcacgagctagattgcgaccattga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
28469726 |
acaactagagacataatacgattgatttagtcttaattgccgttg-caaagatataaaataaactaacatcgatgtcacgagctagattgcgaccattga |
28469824 |
T |
|
| Q |
101 |
cgtttctaaaatatattttactatcaaggatggttttaaattacggctgcacttacgctatatttcaacaaaatgccgagaaatgtgaccattgcgattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28469825 |
cgtttctaaaatatattttactatcaaggatggttttaaattacggctgaacttacgctatatttcaacaaaatgccgagaaatgtgaccattgcgattg |
28469924 |
T |
|
| Q |
201 |
aaattgtggtaacaaaacaggtacggagacgacaaattcctttgaagtttgtcgcaattatagttgtagaccgcaatttaaaaccacagtatctaatata |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28469925 |
aaattgtggtaacaaaacaggtacggggacgacaaattcctttgaagtttgtcgcaattagagttgtagaccgcaatttaaaaccacactatctaatata |
28470024 |
T |
|
| Q |
301 |
cggggggtagagactaaagagtaactacttaaacaatatnnnnnnnnnnnnatttcgaatataaatacaaactttctgatcagttactgnnnnnnnn-ct |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28470025 |
gggggggtagagactaaagagtaactacttaaacaatatcacacacacacaatttcgaatataaatacaaactttctgatcagttactgtttttttttct |
28470124 |
T |
|
| Q |
400 |
agactcatagcagaagagagagtgataagaaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctca |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28470125 |
agactcatagcagaagagagagtgataagaaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctca |
28470224 |
T |
|
| Q |
500 |
aaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagctttctg |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28470225 |
aaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagctttctg |
28470324 |
T |
|
| Q |
600 |
aatttgcaagttcaacttcagggtacccttctctctctttttcattcatctaatattaaaaaatctcaccattaatttgctttgtgaaagtttctttaca |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28470325 |
aatttgcaagttcaacttcagggtacccttctctctctttttcattcatctaatattaaaaaatctcaccattaatttgctttgtgaaagtttctttaca |
28470424 |
T |
|
| Q |
700 |
atttttt |
706 |
Q |
| |
|
||||||| |
|
|
| T |
28470425 |
atttttt |
28470431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 429 - 604
Target Start/End: Original strand, 5229937 - 5230112
Alignment:
| Q |
429 |
aaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagc |
528 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||||||||||| ||||| || ||| | |||||||| || | || |||||||||||| | || || ||||| |
|
|
| T |
5229937 |
aaaaaatgggaagaggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagc |
5230036 |
T |
|
| Q |
529 |
ctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagctttctgaattt |
604 |
Q |
| |
|
|||||||| || ||||| |||||||||||| ||||||||||||| ||||| | |||||||||||||| ||||||| |
|
|
| T |
5230037 |
ttatgaactttctgttctttgtgatgctgaggttgctcttatcatcttctccactcgtggaaagctttatgaattt |
5230112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 6e-39; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 428 - 610
Target Start/End: Complemental strand, 12812097 - 12811915
Alignment:
| Q |
428 |
gaaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaag |
527 |
Q |
| |
|
||||||||||| ||||| || |||||| ||||||| ||||| |||||||| |||||||| || ||||||||||||||||||||||||||||| || |||| |
|
|
| T |
12812097 |
gaaaaaatgggaagaggaagagttgaattgaagagaatagagaacaaaataaaccggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaag |
12811998 |
T |
|
| Q |
528 |
cctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagctttctgaatttgcaagt |
610 |
Q |
| |
|
| |||||||| || ||||| ||||||||||| |||| |||||||||||||| || ||||| || || | |||||||| |||| |
|
|
| T |
12811997 |
cttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactctatgaatttggaagt |
12811915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 429 - 579
Target Start/End: Complemental strand, 34831058 - 34830908
Alignment:
| Q |
429 |
aaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagc |
528 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||||| || || |||||||||||| | |||||||| ||| | ||| |||| || ||| | |||||||||| |
|
|
| T |
34831058 |
aaaaaatgggaagaggaagagttgagttgaagagaattgagaacaaaatcaacagacaagttaccttcgctaaacgaaggaacggtcttttgaaaaaagc |
34830959 |
T |
|
| Q |
529 |
ctatgaactctcagttctatgtgatgctgagattgctcttatcattttctc |
579 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
34830958 |
ttatgaactttctgttctttgtgatgctgaagttgctcttatcatcttctc |
34830908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 580
Target Start/End: Original strand, 12772269 - 12772364
Alignment:
| Q |
485 |
caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctca |
580 |
Q |
| |
|
||||| || |||||||| ||||||||||||||| |||| || |||| |||||| ||||| |||||||||||||| |||||||||| |||||||| |
|
|
| T |
12772269 |
caagtaacattctcaaagagaagaaatggtttgttgaagaaggcctttgaactgtcagtgttatgtgatgctgaggttgctcttattgttttctca |
12772364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 580
Target Start/End: Original strand, 12791129 - 12791224
Alignment:
| Q |
485 |
caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctca |
580 |
Q |
| |
|
||||| || |||||||| ||||||||||||||| |||| || |||| |||||| ||||| |||||||||||||| |||||||||| |||||||| |
|
|
| T |
12791129 |
caagtaacattctcaaagagaagaaatggtttgttgaagaaggcctttgaactgtcagtgttatgtgatgctgaggttgctcttattgttttctca |
12791224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 428 - 558
Target Start/End: Complemental strand, 30643024 - 30642895
Alignment:
| Q |
428 |
gaaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaag |
527 |
Q |
| |
|
||||||||||| ||||| || |||||| ||||||| ||||| |||||||| |||| ||||| ||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
30643024 |
gaaaaaatgggaagaggaagagttgaattgaagagaatagagaacaaaataaaccagcaagcaactttctcaaagagaagaaatggtttgctcaaaaaag |
30642925 |
T |
|
| Q |
528 |
cctatgaactctcagttctatgtgatgctga |
558 |
Q |
| |
|
| |||||||| || |||| ||||||||||| |
|
|
| T |
30642924 |
cttatgaactgtctgttc-ctgtgatgctga |
30642895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 570
Target Start/End: Original strand, 5546362 - 5546447
Alignment:
| Q |
485 |
caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttat |
570 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| |||| ||||| |||||| | || ||||| |||||||| || |||||||||| |
|
|
| T |
5546362 |
caagtaactttctgcaaaagaagaaatggtttgttgaagaaagcatatgaattatctgttctttgtgatgcagaagttgctcttat |
5546447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 483 - 528
Target Start/End: Original strand, 2115269 - 2115314
Alignment:
| Q |
483 |
ggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagc |
528 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
2115269 |
ggcaagtgactttctcaaaaagaagaaatggattgttgaagaaagc |
2115314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 433 - 591
Target Start/End: Complemental strand, 20543657 - 20543499
Alignment:
| Q |
433 |
aatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctat |
532 |
Q |
| |
|
||||||||| || | ||| || || |||||||| || |||||||| || || |||||||| || |||| ||||||||||| ||||||| || || ||| |
|
|
| T |
20543657 |
aatgggtaggggaaaggtagagctaaagaggattgagaacaaaataaatcgtcaagttacatttgcaaagagaagaaatggaatgctgaagaaggcttat |
20543558 |
T |
|
| Q |
533 |
gaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaa |
591 |
Q |
| |
|
|||||||| | || |||||||||||| ||||||| || |||||||| || |||||||| |
|
|
| T |
20543557 |
gaactctctctcctttgtgatgctgaggttgctctcattattttctctagccgtggaaa |
20543499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 483 - 596
Target Start/End: Original strand, 22611520 - 22611633
Alignment:
| Q |
483 |
ggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaag |
582 |
Q |
| |
|
||||||| || |||||||| ||||||| ||| ||| |||| ||||||| ||| || | ||||||||||||||||| |||| ||||||||||| ||||| |
|
|
| T |
22611520 |
ggcaagtaacattctcaaagagaagaagtggattgttgaagaaagcctttgagctttgtgttctatgtgatgctgaagttgcacttatcattttttcaag |
22611619 |
T |
|
| Q |
583 |
tcgtggaaagcttt |
596 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
22611620 |
ccgtggcaagcttt |
22611633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 430 - 579
Target Start/End: Original strand, 45671368 - 45671517
Alignment:
| Q |
430 |
aaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcc |
529 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||| ||||| |||||| | || | ||||| || || | || |||||||||||| | || || || || |
|
|
| T |
45671368 |
aaaaatgggaagagggagagttgaactaaagagaatagagaacaaagttaatagacaagtcacatttgctaagagaagaaatggtgtactcaagaaggct |
45671467 |
T |
|
| Q |
530 |
tatgaactctcagttctatgtgatgctgagattgctcttatcattttctc |
579 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
45671468 |
tatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctc |
45671517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 558
Target Start/End: Complemental strand, 42506720 - 42506647
Alignment:
| Q |
485 |
caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctga |
558 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||| ||||| |||| |||||| ||||| || ||||||||||| |
|
|
| T |
42506720 |
caagtaactttctcaaagagaagaaatggactgcttaaaaaggcctttgaactttcagtgctttgtgatgctga |
42506647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 456 - 567
Target Start/End: Original strand, 38396710 - 38396821
Alignment:
| Q |
456 |
tgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgc |
555 |
Q |
| |
|
||||||| || || ||||| |||||| | |||||||| || ||||| ||||||||||| | |||||||||| |||||||| || ||||| |||||||| |
|
|
| T |
38396710 |
tgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactttctgttctttgtgatgc |
38396809 |
T |
|
| Q |
556 |
tgagattgctct |
567 |
Q |
| |
|
||| ||||||| |
|
|
| T |
38396810 |
agaggttgctct |
38396821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 497 - 596
Target Start/End: Complemental strand, 46039691 - 46039592
Alignment:
| Q |
497 |
tcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagcttt |
596 |
Q |
| |
|
||||| ||||||| ||||||| |||| ||||| | |||||| || || ||||||||||||| ||||||||||||| ||||| |||| ||| ||||||| |
|
|
| T |
46039691 |
tcaaagagaagaagtggtttgttgaagaaagcttttgaactttctgtgttatgtgatgctgaagttgctcttatcatcttctccagtcttggcaagcttt |
46039592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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