View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20480_low_3 (Length: 565)
Name: NF20480_low_3
Description: NF20480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20480_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 16 - 551
Target Start/End: Complemental strand, 40522132 - 40521598
Alignment:
| Q |
16 |
atctagaaggagaagatacgttcaattgtgcctttttcaggtaagcacactcgccgttgtgtcctcagttcttaacttcagcattctagtttgataaagt |
115 |
Q |
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| T |
40522132 |
atctagaaggagaagatacgttcaattgtgcctttttcaggtaagcacactcgccgttgtgtcctcagttcttaacttcagcattctagtttgataaagt |
40522033 |
T |
|
| Q |
116 |
gtttttacctattcatgttcaaatattcgaaacacaggaaacataatgaaaagaagaggtaattttgcaattaaaaaataagagtacgaaatgaaaatag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40522032 |
gtttttacctattcatgttcaaatattcgaaacacaggaaacataatgaaaagaagaggtaattttgcaatta-aaaataagagtacgaaatgaaaatag |
40521934 |
T |
|
| Q |
216 |
cgaacgttatctcaaaccaaacagaactaaaattttgtttgatgtatatttcatttgtcagattgttacactggcaagagttatcataatatattgtatc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40521933 |
cgaacgttatctcaaaccaaacagaactaaaattttgtttgatgtatatttcatttgtcagattattacactggcaagagttatcataatatattgtatc |
40521834 |
T |
|
| Q |
316 |
ctccgattactatagcatgaacataaagccttatcctcacnnnnnnnnctttctttcttgtgaaaataaaggacagagatgatgatgcagaacagcaaag |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40521833 |
ctccgattactatagcatgaacataaagccttatcctcacttttttttctttctttcttgtgaaaataaaggacagagatgatgatgcagaacagcaaag |
40521734 |
T |
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| Q |
416 |
acaatcttcattgagtagatttccacctcataattcattgccgccttgtactgactatgatcttcgtgttggaaacgaagataaagatgtagacacaatt |
515 |
Q |
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| T |
40521733 |
acaatcttcattgagtagatttccacctcataattcattgccgccttgtactgactatgatcttcgtgttggaaacgaagataaagatgtagacacaatt |
40521634 |
T |
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| Q |
516 |
tcaaccgagtatatgaaaagtttgatcctcttgact |
551 |
Q |
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| T |
40521633 |
tcaaccgagtatatgaaaagtttgatcctcttgact |
40521598 |
T |
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