View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20480_low_6 (Length: 474)
Name: NF20480_low_6
Description: NF20480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20480_low_6 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 299 - 462
Target Start/End: Original strand, 32183027 - 32183190
Alignment:
| Q |
299 |
ggatggtagtataatttctgttggtttttatgcctggtggaggggtgcggcctgcagtttggttgacagcagtgggtgttggttgtgggttgttgttcca |
398 |
Q |
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| T |
32183027 |
ggatggtagcagattttttgttggtttttatgcctggtggaggggtgcggcatgcagtttggtagacagcagtgggtgctggttgtgggttgttgttcca |
32183126 |
T |
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| Q |
399 |
gggcctgttttggtggcttgtggtgaggctgagcgttgtttgtggtgaggcagggatattcttg |
462 |
Q |
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| T |
32183127 |
gggcctgttttggtggcttgtggtgaggctgagcgttgtttgtggcgaggcagggatattcttg |
32183190 |
T |
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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1611240 - 1611316
Alignment:
| Q |
1 |
ttggaaaagtccggcaccgtctaaagtagtggcattctcctggaagcttcttcatgatagaataccctcaaaagtga |
77 |
Q |
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| T |
1611240 |
ttggaaaagtccggcaccgtccaaagtggtggccttctcttggaagctttttcatgatagaataccgtcaaaagtga |
1611316 |
T |
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Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 15858142 - 15858260
Alignment:
| Q |
1 |
ttggaaaagtccggcaccgtctaaagtagtggcattctcctggaagcttcttcatgatagaataccctcaaaagtgaccttggctgttagacatgtgtta |
100 |
Q |
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| T |
15858142 |
ttggaaaagtccggcaccgtctaaagttgtggcattctcttggaagcttcttcatgatagaataccctctaaagcgaacttggcggttagacaggtgcta |
15858241 |
T |
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| Q |
101 |
cttccggaggcttctcaag |
119 |
Q |
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| T |
15858242 |
cctccggaggcttctcaag |
15858260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 15858706 - 15858791
Alignment:
| Q |
118 |
agttgttcctgc-tgatgtgcacggttctgtttttgctagcatctgtttttgctgttttgcagttggctgtttgtgcggtctgttc |
202 |
Q |
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| T |
15858706 |
agttgttcctgcatgatgtgcacggttccgtttttgctagcatctgtttttgctgttttgcagctggctgtttgtgcggtctgttc |
15858791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 365 - 462
Target Start/End: Original strand, 15858910 - 15859008
Alignment:
| Q |
365 |
cagcagtgggtgttggttgtgggttgtt-gttccagggcctgttttggtggcttgtggtgaggctgagcgttgtttgtggtgaggcagggatattcttg |
462 |
Q |
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| T |
15858910 |
cagcagtgggtgctggttctggggtgtttgttttagggcctgttttggtggcttgtggtgaggctgcgcgttgtttgtggtaaggcagggatattcttg |
15859008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 2181 - 2296
Alignment:
| Q |
1 |
ttggaaaagtccggcaccgtctaaagtagtggcattctcctggaagcttcttcatgatagaataccctcaaaagtgaccttggctgttagacatgtgtta |
100 |
Q |
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| T |
2181 |
ttggaaaagcccggcgccgtccaaagtcgtggtgttttcatggaagctccttcatgatagaattccgtcaaaagtgaatttggcgtatagacatgtgtta |
2280 |
T |
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| Q |
101 |
cttccggaggcttctc |
116 |
Q |
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| T |
2281 |
cctccggaggcttctc |
2296 |
T |
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