View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20480_low_8 (Length: 450)
Name: NF20480_low_8
Description: NF20480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20480_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Complemental strand, 9692281 - 9691863
Alignment:
| Q |
13 |
aagggtcacatatacaaccatatacaaatgtgataatttttcagtaagtcttgcaatctcttattttaatcgtttgtcaccaatgcaattactagctaga |
112 |
Q |
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| T |
9692281 |
aagggtcacatatacaaccatatacaaatgtgataatttttcagtaagtcttgcaatctcttattttaatcgtttgtcaccaatgcaattactagctaga |
9692182 |
T |
|
| Q |
113 |
atatatatgtaattaatttaagtgtannnnnnngtacatgcagctatgtannnnnnncctaccttcaaaaggagtcattcctcttcataaccacccagga |
212 |
Q |
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| T |
9692181 |
atatatatgtaattaatttaagtgtatttttttgtacatgcagctatgtatttttttcctaccttcaaaaggagtcattcctcttcataaccacccagga |
9692082 |
T |
|
| Q |
213 |
atgactgttttcagtaagcttttgttgggacaaatgcacattaagtcttatgattgggttgatcctgatgtctctcacaatttgttgaagcaaccatctc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9692081 |
atgactgttttcagtaagcttttgttgggacaaatgcacattaagtcttatgattgggttgatcctgatgtctctcacaatttgttgaagcaaccatctc |
9691982 |
T |
|
| Q |
313 |
aatgtatgtattcaaatatttattcatatcaccaaattaaattaatcttatctcatggcatgagatgtgttagtagtatttatataaaacattctttgta |
412 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| ||||| ||| |||||||||| | |||||||||||||||||| |
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| T |
9691981 |
aatgtatgtattcaaata-ttattcatatcaccaaattaaattaatctcaattcatgggatgaggtgttttagtagtatatctataaaacattctttgta |
9691883 |
T |
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| Q |
413 |
acacttgcccatggtttaaa |
432 |
Q |
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| T |
9691882 |
acacttgcccatggtttaaa |
9691863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 33528418 - 33528535
Alignment:
| Q |
182 |
aggagtcattcctcttcataaccacccaggaatgactgttttcagtaagcttttgttgggacaaatgcacattaagtcttatgattgggttgatcctgat |
281 |
Q |
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|||||||||||| || |||||||||||||| |||||||||||||| || ||| | || || |||||||||||||||||||||||||||||||||| ||| |
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| T |
33528418 |
aggagtcattcccctccataaccacccaggcatgactgttttcagcaaacttctattagggcaaatgcacattaagtcttatgattgggttgatcatgag |
33528517 |
T |
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| Q |
282 |
gtctctcacaatttgttg |
299 |
Q |
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| T |
33528518 |
gcctctcacaacttgttg |
33528535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 2201621 - 2201709
Alignment:
| Q |
182 |
aggagtcattcctcttcataaccacccaggaatgactgttttcagtaagcttttgttgggacaaatgcacattaagtcttatgattggg |
270 |
Q |
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|||||| ||||||||||| || ||||| |||||||| ||||| || |||||| | || ||| |||||||| || ||||||||||||| |
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| T |
2201621 |
aggagttattcctcttcacaatcaccctggaatgacggtttttagcaagcttctatttggaactatgcacatcaaatcttatgattggg |
2201709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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