View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20481_high_1 (Length: 703)

Name: NF20481_high_1
Description: NF20481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20481_high_1
NF20481_high_1
[»] chr7 (1 HSPs)
chr7 (17-687)||(48166607-48167277)


Alignment Details
Target: chr7 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 17 - 687
Target Start/End: Complemental strand, 48167277 - 48166607
Alignment:
Q  17 cacagaactcatagacaagatatctttcgccatcttccatgcaacagccaaacaagcaaacaaggtttggatgacgaagtctagaaagaccagcaagttc 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48167277 cacagaactcgtagacaagatatctttcgccatcttccatgcaacagccaaacaagcaaacaaggtttggatgacgaagtctagaaagaccagcaagttc 48167178  T
Q  117 tcgagtgaaagaatcagaactagaggtgttactctttgtcaaatgcttgatggccacaacttgaccacttggcaaaacacctctaaacacttcacctgca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48167177 tcgagtgaaagaatcagaactagaggtgttactctttgtcaaatgcttgatggccacaacttgaccacttggcaaaacacctctaaacacttcacccgca 48167078  T
Q  217 ctcccgcgtccaaggtttatcttttcattttcaaaattcatggcattttcaatttcagtttttgtgaaccagtaaagtccagaccaagtagctatctgtt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48167077 ctcccgcgtccaaggtttatcttttcattttcaaaattcatggcattttcaatttcagtttttgtgaaccagtaaagtccagaccaagtagctatctgtt 48166978  T
Q  317 tcaactggacgtgcttcttaacaggcttcttctttgatacacattttaccagaaaagcaataatcaataatgctaagatagctatcaccaacattgccaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48166977 tcaactggacgtgcttcttaacaggcttcttctttgatacacattttaccagaaaagcaataatcaataatgctaagatagctatcaccaacattgccaa 48166878  T
Q  417 cacaagtttcttcattgatgattctaggttcacaaaacgaaattatgtcaatttcattgttagtttatttatgacagtctacaccattattagtggtgta 516  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48166877 cacaagtttcttcattgatgattctaggttcacaaaacaaaattatgtcaatttcattgttagtttatttatgacaatctacaccattattagtggtgta 48166778  T
Q  517 tatttttcgtcnnnnnnnntcgtgaaatagactattaaacggacttaccaaaaagtcaggtcaaaccttaaaaatgagcctatggcagactaataggaca 616  Q
    |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48166777 tatttttcgtcaaaaaaaatcgtgaaatagactattaaacggacttaccaaaaagtcaggtcaaaccttaaaaatgagcctatggcagactaataggaca 48166678  T
Q  617 gattgaagcctaacattttcaaagcaagtcatgttcagcctagcaaagtttaacctagtctattttcacct 687  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48166677 gattgaagcctaacattttcaaagtaagtcatgttcagcctagcaaagtttaacctagtctattttcacct 48166607  T

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