View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20481_high_6 (Length: 237)
Name: NF20481_high_6
Description: NF20481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20481_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 4048711 - 4048627
Alignment:
| Q |
16 |
agacatggacaacgacaaacaacaacatcgacaacgacgagaggtagacggagaacaactaaagaaagaaagaccaacactattc |
100 |
Q |
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| T |
4048711 |
agacatggacaacgacaaacaacaacatcgacaacgacgagaggtagacggagaacaactaatgaaagaaagaccaacactattc |
4048627 |
T |
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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 4048565 - 4048503
Alignment:
| Q |
162 |
aaagtgttgttgatgtttgcgtgtgggtaataatgtaagaaagaacagcgtgacgtctctgct |
224 |
Q |
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| T |
4048565 |
aaagtgttgttgatgttagcgtgtgggtaataatgtaagaaagaacagcgtgacgtctctgct |
4048503 |
T |
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