View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20481_low_3 (Length: 377)
Name: NF20481_low_3
Description: NF20481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20481_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 35916218 - 35916565
Alignment:
| Q |
11 |
gccttaatcctttggttctcacgggaataagactgcgataattcagaattcggtcaggagttcttaccgatannnnnnnnnnnnncctattttttaacat |
110 |
Q |
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| T |
35916218 |
gccttaatcctttggttctcacgggaataagactgcgataattcagaattcggtcaggagttcttaccgataatatatata----cctattttttaacat |
35916313 |
T |
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| Q |
111 |
ctcaatgtgtttgtcttatacattattggcaaaaaattatacaaattaatagattaaatgcatgtatagttttgctgacgaggttgcgggtttgcatctt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916314 |
ctcaatgtgtttgtcttatacattattggcaaaaaattatacaaattaatatattaaatgcatgtatagttttgctgacgaggttgcgggtttgcatctt |
35916413 |
T |
|
| Q |
211 |
tgtgcaatgtaggggatgatcctgaattggtgaagaccaagttaagacattgggctcaagctgttgcatgttccgtgatgcagtcttctggaagtggaag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916414 |
tgtgcaatgtaggggatgatcctgaattggtgaagaccaaattaagacattgggctcaagctgttgcatgttccgtgatgcagtcttctggaagtggaag |
35916513 |
T |
|
| Q |
311 |
ttgagctgtttcccacaaagggattgatgttgtttcgaaagatgcacataca |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916514 |
ttgagctgtttcccacaaagggattgatgttgtttcgaaagatgcacataca |
35916565 |
T |
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