View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20481_low_4 (Length: 377)

Name: NF20481_low_4
Description: NF20481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20481_low_4
NF20481_low_4
[»] chr2 (20 HSPs)
chr2 (17-128)||(15012773-15012885)
chr2 (17-102)||(31968714-31968802)
chr2 (17-104)||(15019287-15019377)
chr2 (263-337)||(39936467-39936541)
chr2 (267-339)||(39935584-39935656)
chr2 (267-335)||(3555388-3555456)
chr2 (263-309)||(8710714-8710760)
chr2 (263-309)||(11830498-11830544)
chr2 (263-313)||(20983177-20983227)
chr2 (263-309)||(25623422-25623468)
chr2 (263-312)||(21103215-21103264)
chr2 (263-312)||(29958464-29958513)
chr2 (265-309)||(15604585-15604629)
chr2 (263-311)||(29957951-29957999)
chr2 (260-308)||(41587365-41587413)
chr2 (266-309)||(6588820-6588863)
chr2 (266-309)||(8710605-8710648)
chr2 (267-309)||(25624353-25624395)
chr2 (263-312)||(20982658-20982707)
chr2 (198-250)||(39936605-39936656)
[»] chr7 (28 HSPs)
chr7 (263-337)||(18855874-18855948)
chr7 (263-312)||(43124397-43124446)
chr7 (263-309)||(45914658-45914704)
chr7 (260-309)||(32934594-32934643)
chr7 (266-309)||(13384639-13384682)
chr7 (266-309)||(32068233-32068276)
chr7 (263-309)||(4226259-4226305)
chr7 (263-309)||(18087586-18087632)
chr7 (263-309)||(23058675-23058721)
chr7 (263-309)||(25628612-25628658)
chr7 (260-306)||(42618160-42618206)
chr7 (260-309)||(10600195-10600244)
chr7 (260-309)||(12228516-12228565)
chr7 (263-312)||(22661491-22661540)
chr7 (263-312)||(27480121-27480170)
chr7 (260-309)||(47558161-47558210)
chr7 (263-306)||(25453377-25453420)
chr7 (266-309)||(27138187-27138230)
chr7 (266-309)||(42618048-42618091)
chr7 (262-309)||(46205555-46205602)
chr7 (263-309)||(27480667-27480713)
chr7 (266-307)||(23058566-23058607)
chr7 (260-309)||(25628724-25628773)
chr7 (260-309)||(28890710-28890759)
chr7 (260-309)||(43266397-43266446)
chr7 (266-307)||(43266514-43266555)
chr7 (198-250)||(32068114-32068166)
chr7 (265-309)||(33808459-33808503)
[»] scaffold0775 (2 HSPs)
scaffold0775 (263-337)||(5096-5169)
scaffold0775 (263-327)||(6208-6272)
[»] chr3 (38 HSPs)
chr3 (263-337)||(47857465-47857539)
chr3 (260-309)||(3596355-3596404)
chr3 (260-309)||(41422103-41422152)
chr3 (263-312)||(45279201-45279250)
chr3 (262-337)||(47856520-47856595)
chr3 (260-309)||(29192913-29192962)
chr3 (263-311)||(32717023-32717071)
chr3 (266-309)||(52032385-52032428)
chr3 (263-313)||(2944047-2944097)
chr3 (263-309)||(3469334-3469380)
chr3 (263-309)||(6956383-6956429)
chr3 (263-313)||(11026548-11026598)
chr3 (263-309)||(32716383-32716429)
chr3 (263-309)||(35643985-35644031)
chr3 (263-309)||(40788666-40788712)
chr3 (267-329)||(42855533-42855595)
chr3 (263-313)||(48188512-48188562)
chr3 (263-309)||(52032272-52032318)
chr3 (263-312)||(1756684-1756733)
chr3 (263-312)||(2944583-2944632)
chr3 (260-309)||(13948911-13948960)
chr3 (260-309)||(29118669-29118718)
chr3 (263-312)||(37249715-37249764)
chr3 (263-312)||(45278678-45278727)
chr3 (263-312)||(48189016-48189065)
chr3 (266-309)||(3469446-3469489)
chr3 (262-309)||(10294694-10294741)
chr3 (263-306)||(32306558-32306601)
chr3 (263-309)||(9368549-9368595)
chr3 (263-309)||(29686075-29686121)
chr3 (267-309)||(40788558-40788600)
chr3 (263-312)||(1757221-1757270)
chr3 (292-337)||(3850306-3850351)
chr3 (263-312)||(37249333-37249382)
chr3 (263-312)||(43105751-43105800)
chr3 (198-251)||(47856405-47856458)
chr3 (198-250)||(36314625-36314677)
chr3 (198-250)||(48322704-48322756)
[»] chr6 (19 HSPs)
chr6 (260-309)||(31407124-31407173)
chr6 (263-309)||(22503020-22503066)
chr6 (260-309)||(15913794-15913843)
chr6 (263-335)||(139927-139998)
chr6 (263-335)||(147948-148019)
chr6 (267-313)||(1661346-1661392)
chr6 (263-309)||(7905489-7905535)
chr6 (263-309)||(8089577-8089623)
chr6 (263-313)||(14657125-14657175)
chr6 (263-309)||(21836164-21836210)
chr6 (263-313)||(33400100-33400150)
chr6 (260-309)||(12065351-12065400)
chr6 (263-309)||(7160938-7160984)
chr6 (263-305)||(20651144-20651186)
chr6 (267-311)||(4117465-4117509)
chr6 (198-250)||(6517521-6517573)
chr6 (198-250)||(7905261-7905313)
chr6 (261-309)||(7905375-7905423)
chr6 (266-306)||(21836279-21836319)
[»] chr4 (34 HSPs)
chr4 (263-311)||(23455607-23455655)
chr4 (263-309)||(22718185-22718231)
chr4 (260-306)||(27891715-27891761)
chr4 (266-309)||(50504071-50504114)
chr4 (263-309)||(22986985-22987031)
chr4 (263-309)||(23455088-23455134)
chr4 (263-309)||(27069044-27069090)
chr4 (267-309)||(40316911-40316953)
chr4 (267-309)||(40326985-40327027)
chr4 (263-309)||(50503959-50504005)
chr4 (263-313)||(52816339-52816389)
chr4 (260-309)||(30641648-30641697)
chr4 (263-312)||(38982513-38982562)
chr4 (263-312)||(56556716-56556765)
chr4 (198-250)||(51859762-51859814)
chr4 (263-311)||(55867360-55867408)
chr4 (266-309)||(27069156-27069199)
chr4 (266-309)||(39666913-39666956)
chr4 (262-309)||(39701042-39701089)
chr4 (263-305)||(147453-147495)
chr4 (263-309)||(32063584-32063630)
chr4 (263-309)||(45463319-45463365)
chr4 (263-309)||(52573362-52573408)
chr4 (263-309)||(52815797-52815843)
chr4 (263-309)||(54858694-54858740)
chr4 (263-313)||(56557241-56557291)
chr4 (206-251)||(22923164-22923209)
chr4 (206-251)||(22927817-22927862)
chr4 (206-251)||(22984096-22984141)
chr4 (206-251)||(22997684-22997729)
chr4 (263-312)||(38813688-38813737)
chr4 (263-312)||(38814244-38814293)
chr4 (263-308)||(39667023-39667068)
chr4 (198-250)||(11523967-11524019)
[»] chr8 (19 HSPs)
chr8 (263-309)||(25124809-25124855)
chr8 (260-309)||(35634345-35634394)
chr8 (260-311)||(34176572-34176623)
chr8 (261-308)||(41353820-41353867)
chr8 (263-309)||(15230177-15230223)
chr8 (263-312)||(34213898-34213947)
chr8 (263-312)||(34665904-34665953)
chr8 (263-311)||(11761974-11762022)
chr8 (263-306)||(6471824-6471867)
chr8 (266-309)||(27500225-27500268)
chr8 (263-309)||(10445581-10445627)
chr8 (263-309)||(21432939-21432985)
chr8 (267-309)||(34177218-34177260)
chr8 (260-301)||(8997943-8997984)
chr8 (267-312)||(34214445-34214490)
chr8 (263-312)||(34666458-34666507)
chr8 (198-250)||(11674713-11674765)
chr8 (269-309)||(15230071-15230111)
chr8 (198-250)||(36325561-36325613)
[»] chr5 (19 HSPs)
chr5 (263-309)||(22870382-22870428)
chr5 (264-309)||(20153164-20153209)
chr5 (263-313)||(36477292-36477342)
chr5 (263-313)||(39181191-39181241)
chr5 (260-309)||(17544179-17544228)
chr5 (260-309)||(17544294-17544343)
chr5 (263-312)||(20072255-20072304)
chr5 (263-312)||(20072786-20072835)
chr5 (263-312)||(39181713-39181762)
chr5 (266-309)||(20153055-20153098)
chr5 (266-309)||(22298679-22298722)
chr5 (264-303)||(33871590-33871629)
chr5 (267-314)||(36476903-36476950)
chr5 (203-253)||(3656771-3656821)
chr5 (266-308)||(21287904-21287946)
chr5 (263-309)||(22869739-22869785)
chr5 (260-309)||(11741765-11741814)
chr5 (263-312)||(16533542-16533591)
chr5 (198-250)||(24141470-24141522)
[»] chr1 (27 HSPs)
chr1 (260-309)||(5734140-5734189)
chr1 (260-309)||(8898648-8898697)
chr1 (263-312)||(50062337-50062386)
chr1 (263-309)||(7371424-7371470)
chr1 (263-309)||(31058303-31058349)
chr1 (263-309)||(40714578-40714624)
chr1 (267-308)||(20760752-20760793)
chr1 (263-312)||(46282205-46282254)
chr1 (263-312)||(49093175-49093224)
chr1 (263-312)||(49093730-49093779)
chr1 (266-306)||(30326633-30326673)
chr1 (203-251)||(45749865-45749913)
chr1 (198-250)||(49955703-49955755)
chr1 (260-312)||(50062865-50062917)
chr1 (266-309)||(8898763-8898806)
chr1 (266-309)||(17189091-17189134)
chr1 (263-306)||(32132438-32132481)
chr1 (263-306)||(35038589-35038632)
chr1 (266-309)||(35040860-35040903)
chr1 (263-306)||(45750091-45750134)
chr1 (266-309)||(49955593-49955636)
chr1 (263-309)||(13295269-13295315)
chr1 (263-309)||(28324938-28324984)
chr1 (267-309)||(49955485-49955527)
chr1 (260-309)||(12905905-12905954)
chr1 (267-312)||(46282710-46282755)
chr1 (266-306)||(28325053-28325093)
[»] scaffold0128 (1 HSPs)
scaffold0128 (260-307)||(19988-20035)
[»] scaffold0328 (2 HSPs)
scaffold0328 (263-309)||(11386-11432)
scaffold0328 (266-309)||(11277-11320)
[»] scaffold0771 (1 HSPs)
scaffold0771 (260-309)||(1051-1100)
[»] scaffold0388 (2 HSPs)
scaffold0388 (263-308)||(12486-12531)
scaffold0388 (266-306)||(12376-12416)
[»] scaffold0006 (2 HSPs)
scaffold0006 (266-309)||(222035-222078)
scaffold0006 (263-309)||(221923-221969)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 15012885 - 15012773
Alignment:
Q  17 aaaacaagattctgggagaaaaacaatttgttggacatggttgattctgagagttcaaggtaagtgttgtgttggagatgaccagat-aatacttcaaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15012885 aaaacaagattctgggagaaaaacaatttgttggacatggttgattctgagagttcaaggtaagtgttgtgttggagatgaccagataaatacttcaaaa 15012786  T
Q  116 tgttacctctctc 128  Q
    |||||| ||||||    
T  15012785 tgttacttctctc 15012773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 31968802 - 31968714
Alignment:
Q  17 aaaacaagattctgggagaaaaacaatttgttggacatggttgattctgagagttcaaggtaag---tgttgtgttggagatgaccaga 102  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||   ||||||||||||||||||||||    
T  31968802 aaaacaagattatgggagaaaaacaatttgttggacatggttgattttgagagttcaatgtgagtgttgttgtgttggagatgaccaga 31968714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 15019377 - 15019287
Alignment:
Q  17 aaaacaagattctgggagaaaaacaatttgttggacatggttgattctgagagttcaaggtaag---tgttgtgttggagatgaccagata 104  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||   ||||||||||||||| ||||||||    
T  15019377 aaaacaagattctgggagaaaaacaatttgttggacatgggtgattttgagagttcaatgtgagtgttgttgtgttggagataaccagata 15019287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 263 - 337
Target Start/End: Complemental strand, 39936541 - 39936467
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctgatatcatcttgtcaaaaccttcact 337  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  39936541 cacgtcatcaaattagcaaaatggcatggaaaaggacaaaaatacccctgatgtcatcttatcaaaaccttcact 39936467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 39935584 - 39935656
Alignment:
Q  267 tcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctgatatcatcttgtcaaaaccttcacttc 339  Q
    ||||||||||| ||||||||||||| |||  ||||||||||||||||||||||||| ||||||||||||||||    
T  39935584 tcatcaaattagcaaaatgacatggaaaataacaaaaatacccctgatatcatcttctcaaaaccttcacttc 39935656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 3555388 - 3555456
Alignment:
Q  267 tcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctgatatcatcttgtcaaaaccttca 335  Q
    ||||||||||| ||||||| |||| ||||| ||| ||||||||||||| ||||||| ||||||||||||    
T  3555388 tcatcaaattaacaaaatggcatgagaaagaacataaatacccctgatgtcatcttctcaaaaccttca 3555456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 8710760 - 8710714
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  8710760 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 8710714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 11830498 - 11830544
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  11830498 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 11830544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 20983227 - 20983177
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctga 313  Q
    ||||||||||||||| ||||||| ||||||||  |||||||||||||||||    
T  20983227 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctga 20983177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 25623422 - 25623468
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  25623422 cacgtcatcaaattaacaaaatggcatgggaatggacaaaaataccc 25623468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 21103215 - 21103264
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  21103215 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 21103264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 29958513 - 29958464
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  29958513 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 29958464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 15604629 - 15604585
Alignment:
Q  265 cgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||||    
T  15604629 cgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 15604585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 29957951 - 29957999
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccct 311  Q
    ||||||||||||||| ||||||| ||||||||  |||||||||||||||    
T  29957951 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 29957999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 41587365 - 41587413
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacc 308  Q
    |||||||||||||||||| ||||||  |||||||| |||||||||||||    
T  41587365 tgtcacgtcatcaaattagcaaaattgcatgggaatggacaaaaatacc 41587413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 6588820 - 6588863
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||    
T  6588820 gtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 6588863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 8710605 - 8710648
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||    
T  8710605 gtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 8710648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 25624395 - 25624353
Alignment:
Q  267 tcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||    
T  25624395 tcatcaaattaacaaaatggcatgggaatggacaaaaataccc 25624353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 20982658 - 20982707
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| |||||||  |||||||  ||||||||||||||||    
T  20982658 cacgtcatcaaattagcaaaatggtatgggaattgacaaaaatacccctg 20982707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 39936656 - 39936605
Alignment:
Q  198 gtccctgcaattagacgtggtttaaaaattagtctttgtaattgttaatcctg 250  Q
    |||||||||||||| |||||||| |||||| ||| ||||||| ||||||||||    
T  39936656 gtccctgcaattaggcgtggttt-aaaattggtccttgtaatcgttaatcctg 39936605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 263 - 337
Target Start/End: Complemental strand, 18855948 - 18855874
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctgatatcatcttgtcaaaaccttcact 337  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||| |||| ||||||| ||||||||||||||    
T  18855948 cacgtcatcaaattagcaaaatagcatgggaaaggacaaaaatacccatgatgtcatcttctcaaaaccttcact 18855874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 43124446 - 43124397
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  43124446 cacgtcatcaaattagcaaaatgacatgggaatggacaaaaatacccctg 43124397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 45914658 - 45914704
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  45914658 cacgtcatcaaattagcaaaatgacatgggaatggacaaaaataccc 45914704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 32934643 - 32934594
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  32934643 tgtcacgacatcaaattagcaaaatgacatgggaatggacaaaaataccc 32934594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 13384639 - 13384682
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| |||||||||||||||| ||||||||||||||    
T  13384639 gtcatcaaattaacaaaatgacatgggaatggacaaaaataccc 13384682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 32068233 - 32068276
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| ||||||| |||||||||||||||||||||||    
T  32068233 gtcatcaaattagcaaaatggcatgggaaaggacaaaaataccc 32068276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 4226259 - 4226305
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  4226259 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 4226305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 18087632 - 18087586
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  18087632 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 18087586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 23058721 - 23058675
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  23058721 cacgtcatcaaattaacaaaatggcatgggaatggacaaaaataccc 23058675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 25628612 - 25628658
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  25628612 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 25628658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 42618206 - 42618160
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaata 306  Q
    |||||||||||||||||| ||||||| |||||||| |||||||||||    
T  42618206 tgtcacgtcatcaaattagcaaaatggcatgggaatggacaaaaata 42618160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 10600244 - 10600195
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||| |||||||||||| ||||||| |||||||| ||||||||||||||    
T  10600244 tgtcatgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 10600195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 12228516 - 12228565
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||||||| ||||||| |||| ||| ||||||||||||||    
T  12228516 tgtcacgtcatcaaattaacaaaatggcatgagaatggacaaaaataccc 12228565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 22661491 - 22661540
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  22661491 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 22661540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 27480121 - 27480170
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  27480121 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 27480170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 47558161 - 47558210
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||||||| ||||||| |||||||| ||| ||||||||||    
T  47558161 tgtcacgtcatcaaattagcaaaatgtcatgggaatggataaaaataccc 47558210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 25453420 - 25453377
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaata 306  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||    
T  25453420 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaata 25453377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 27138230 - 27138187
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| |||||| ||||||||| ||||||||||||||    
T  27138230 gtcatcaaattaacaaaataacatgggaatggacaaaaataccc 27138187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 42618048 - 42618091
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||    
T  42618048 gtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 42618091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 46205602 - 46205555
Alignment:
Q  262 tcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||||  |||||| |||||||| ||||||||||||||    
T  46205602 tcacgtcatcaaattaggaaaatggcatgggaatggacaaaaataccc 46205555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 27480713 - 27480667
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| ||||||||  |||||||||||||    
T  27480713 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaataccc 27480667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 23058566 - 23058607
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaatac 307  Q
    |||||||||||| ||||||| |||||||| ||||||||||||    
T  23058566 gtcatcaaattagcaaaatgtcatgggaatggacaaaaatac 23058607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 25628773 - 25628724
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||| |||||||||||| ||||||| |||||||| |||||||| |||||    
T  25628773 tgtcaagtcatcaaattagcaaaatggcatgggaatggacaaaactaccc 25628724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 28890710 - 28890759
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||||||| ||||||| ||||  || ||||||||||||||    
T  28890710 tgtcacgtcatcaaattagcaaaatggcatgaaaatggacaaaaataccc 28890759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 43266397 - 43266446
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||||||| |||||||  ||||||| | ||||||||||||    
T  43266397 tgtcacgtcatcaaattaacaaaatggtatgggaatgaacaaaaataccc 43266446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 43266555 - 43266514
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaatac 307  Q
    |||||||||||| |||||||||||| ||| ||||||||||||    
T  43266555 gtcatcaaattagcaaaatgacatgagaatggacaaaaatac 43266514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 32068114 - 32068166
Alignment:
Q  198 gtccctgcaattagacgtggtttaaaaattagtctttgtaattgttaatcctg 250  Q
    |||| |||||||||||||  |||||||||||||| ||||||| | ||||||||    
T  32068114 gtccttgcaattagacgtcatttaaaaattagtccttgtaatcgctaatcctg 32068166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 33808459 - 33808503
Alignment:
Q  265 cgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||| |||||||  ||||||| ||||||||||||||    
T  33808459 cgtcatcaaattagcaaaatgggatgggaatggacaaaaataccc 33808503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0775 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0775
Description:

Target: scaffold0775; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 5096 - 5169
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctgatatcatcttgtcaaaaccttcact 337  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||| |  ||||||| ||||||||||||||    
T  5096 cacgtcatcaaattagcaaaatgacatggaaaaggacaaaaatacccct-acgtcatcttctcaaaaccttcact 5169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0775; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 6272 - 6208
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctgatatcatcttgtcaa 327  Q
    ||||||||||||||| |||| || ||| |||||||||||||||||| ||||| ||||||| ||||    
T  6272 cacgtcatcaaattagcaaagtggcataggaaaggacaaaaataccactgatgtcatcttctcaa 6208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 337
Target Start/End: Complemental strand, 47857539 - 47857465
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctgatatcatcttgtcaaaaccttcact 337  Q
    |||||||| |||||| ||||||  ||| |||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  47857539 cacgtcataaaattagcaaaatagcataggaaaggacaaatatacccctgatgtcatcttctcaaaaccttcact 47857465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 3596404 - 3596355
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  3596404 tgtcacgtcatcaaattagcaaaatgacatgggaatggacaaaaataccc 3596355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 41422103 - 41422152
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  41422103 tgtcacgtcatcaaattagcaaaatgacatgggaatggacaaaaataccc 41422152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 45279250 - 45279201
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  45279250 cacgtcatcaaattagcaaaatgacatgggaatggacaaaaatacccctg 45279201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 337
Target Start/End: Original strand, 47856520 - 47856595
Alignment:
Q  262 tcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctgatatcatcttgtcaaaaccttcact 337  Q
    ||||||||| |||||| ||||||  ||| | ||| |||||||||||||||||| ||||||| ||||||||||||||    
T  47856520 tcacgtcattaaattagcaaaatagcatagaaaatgacaaaaatacccctgatgtcatcttctcaaaaccttcact 47856595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 29192962 - 29192913
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||||||| ||||||||||||||||  |||||||||||||    
T  29192962 tgtcacgtcatcaaattagcaaaatgacatgggaattgacaaaaataccc 29192913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 32717071 - 32717023
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccct 311  Q
    ||||||||||||||| ||||||||||| |||| ||||||||||||||||    
T  32717071 cacgtcatcaaattagcaaaatgacataggaatggacaaaaatacccct 32717023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 52032428 - 52032385
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| |||||||||||||||| ||||||||||||||    
T  52032428 gtcatcaaattagcaaaatgacatgggaatggacaaaaataccc 52032385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 2944047 - 2944097
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctga 313  Q
    ||||||||||||||| ||||||| ||||||||  |||||||||||||||||    
T  2944047 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctga 2944097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 3469334 - 3469380
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  3469334 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 3469380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 6956383 - 6956429
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||| |||||| |||||||||||||||| ||||||||||||||    
T  6956383 cacgtcataaaattaacaaaatgacatgggaatggacaaaaataccc 6956429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 11026598 - 11026548
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctga 313  Q
    ||||||||||||||| ||||||| ||||||||  |||||||||||||||||    
T  11026598 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctga 11026548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 32716383 - 32716429
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  32716383 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 32716429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 35643985 - 35644031
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  35643985 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 35644031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 40788712 - 40788666
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  40788712 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 40788666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 42855595 - 42855533
Alignment:
Q  267 tcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctgatatcatcttgtcaaaa 329  Q
    ||||||||||| ||||||| | |||||||||| |||||||||||| || ||||||| ||||||    
T  42855595 tcatcaaattagcaaaatggcttgggaaaggataaaaatacccctaatttcatcttctcaaaa 42855533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 48188512 - 48188562
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctga 313  Q
    ||||||||||||||| ||||||| ||||||||  |||||||||||||||||    
T  48188512 cacgtcatcaaattagcaaaatgccatgggaattgacaaaaatacccctga 48188562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 52032272 - 52032318
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  52032272 cacgtcatcaaattaacaaaatggcatgggaatggacaaaaataccc 52032318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 1756684 - 1756733
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  1756684 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 1756733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 2944632 - 2944583
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  2944632 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 2944583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 13948911 - 13948960
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||| |||||||||||| ||||||| |||||||| ||||||||||||||    
T  13948911 tgtcaagtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 13948960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 29118669 - 29118718
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||| |||||||||||| ||||||| |||||||| ||||||||||||||    
T  29118669 tgtcaagtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 29118718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 37249764 - 37249715
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  37249764 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 37249715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 45278678 - 45278727
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  45278678 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 45278727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 48189065 - 48189016
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  48189065 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 48189016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 3469489 - 3469446
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||    
T  3469489 gtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 3469446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 10294694 - 10294741
Alignment:
Q  262 tcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||||| ||||||||||||| || | ||||||||||||    
T  10294694 tcacgtcatcaaattagcaaaatgacatggaaatgtacaaaaataccc 10294741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 32306558 - 32306601
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaata 306  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||    
T  32306558 cacgtcatcaaattagcaaaatgacttgggaatggacaaaaata 32306601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 9368595 - 9368549
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||| ||| ||||||||||||||    
T  9368595 cacgtcatcaaattaacaaaatggcatgagaatggacaaaaataccc 9368549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 29686075 - 29686121
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||| ||||||||||    
T  29686075 cacgtcatcaaattagcaaaatggcatgggaatggagaaaaataccc 29686121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 40788558 - 40788600
Alignment:
Q  267 tcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||    
T  40788558 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 40788600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 1757270 - 1757221
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| |||| |||  ||||||||||||||||    
T  1757270 cacgtcatcaaattagcaaaatggcatgagaattgacaaaaatacccctg 1757221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 3850351 - 3850306
Alignment:
Q  292 gaaaggacaaaaatacccctgatatcatcttgtcaaaaccttcact 337  Q
    ||||||||||||| | ||||||| ||||||| ||||||||||||||    
T  3850351 gaaaggacaaaaaaaaccctgatgtcatcttctcaaaaccttcact 3850306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 37249333 - 37249382
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||| ||  ||||||||||||||||    
T  37249333 cacgtcatcaaattagcaaaatggcatggaaattgacaaaaatacccctg 37249382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 43105800 - 43105751
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||| ||||  ||||||||||||||||    
T  43105800 cacgtcatcaaattagcaaaatggcattggaattgacaaaaatacccctg 43105751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 47856405 - 47856458
Alignment:
Q  198 gtccctgcaattagacgtggtttaaaaattagtctttgtaattgttaatcctga 251  Q
    |||||||||||||  ||| ||||||||||| ||| ||||||| |||||||||||    
T  47856405 gtccctgcaattaagcgtcgtttaaaaattggtccttgtaatcgttaatcctga 47856458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 36314677 - 36314625
Alignment:
Q  198 gtccctgcaattagacgtggtttaaaaattagtctttgtaattgttaatcctg 250  Q
    |||| ||||||||| ||| ||||||||||| |||  |||||||||||||||||    
T  36314677 gtccttgcaattaggcgtcgtttaaaaattcgtccctgtaattgttaatcctg 36314625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 48322756 - 48322704
Alignment:
Q  198 gtccctgcaattagacgtggtttaaaaattagtctttgtaattgttaatcctg 250  Q
    |||| ||||||||| ||| ||||||||||| |||  |||||||||||||||||    
T  48322756 gtccttgcaattaggcgtcgtttaaaaattcgtccctgtaattgttaatcctg 48322704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 31407173 - 31407124
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  31407173 tgtcacgtcatcaaattagcaaaatgacatgggaatggacaaaaataccc 31407124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 22503066 - 22503020
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  22503066 cacgtcatcaaattagcaaaatgacatgggaatggacaaaaataccc 22503020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 15913843 - 15913794
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  15913843 tgtcacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 15913794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 139927 - 139998
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctgatatcatcttgtcaaaaccttca 335  Q
    ||||||||||||||| ||||||||| ||  ||||| |||||||||||||||| ||||||| || |||||||||    
T  139927 cacgtcatcaaattagcaaaatgacgtgaaaaagg-caaaaatacccctgatgtcatcttctcgaaaccttca 139998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 147948 - 148019
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctgatatcatcttgtcaaaaccttca 335  Q
    ||||||||||||||| ||||||||| ||  ||||| |||||||||||||||| ||||||| || |||||||||    
T  147948 cacgtcatcaaattagcaaaatgacgtgaaaaagg-caaaaatacccctgatgtcatcttctcgaaaccttca 148019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 1661392 - 1661346
Alignment:
Q  267 tcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctga 313  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||||    
T  1661392 tcatcaaattatcaaaatggcatgggaattgacaaaaatacccctga 1661346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 7905535 - 7905489
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  7905535 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 7905489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 8089577 - 8089623
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  8089577 cacgtcatcaaattaacaaaatggcatgggaatggacaaaaataccc 8089623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 14657175 - 14657125
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctga 313  Q
    ||||||||||||||| ||||||| ||||||||  |||||||||||||||||    
T  14657175 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctga 14657125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 21836164 - 21836210
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  21836164 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 21836210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 33400100 - 33400150
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctga 313  Q
    ||||||||||||||| ||||||| ||||||||  |||||||||||||||||    
T  33400100 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctga 33400150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 12065351 - 12065400
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||| |||||||||||| ||||||| |||||||| ||||||||||||||    
T  12065351 tgtcaggtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 12065400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 7160938 - 7160984
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||  |||||||| ||||||||||||||    
T  7160938 cacgtcatcaaattagcaaaatagcatgggaatggacaaaaataccc 7160984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 20651144 - 20651186
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaat 305  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||    
T  20651144 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaat 20651186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 4117509 - 4117465
Alignment:
Q  267 tcatcaaattatcaaaatgacatgggaaaggacaaaaatacccct 311  Q
    ||||||||||| ||||||| ||||||||  |||||||||||||||    
T  4117509 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 4117465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 6517521 - 6517573
Alignment:
Q  198 gtccctgcaattagacgtggtttaaaaattagtctttgtaattgttaatcctg 250  Q
    |||| ||||||||| |||  |||||||||||||||||||||| | ||||||||    
T  6517521 gtccttgcaattaggcgtcatttaaaaattagtctttgtaatcgctaatcctg 6517573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 7905261 - 7905313
Alignment:
Q  198 gtccctgcaattagacgtggtttaaaaattagtctttgtaattgttaatcctg 250  Q
    |||| ||||||||| |||  |||||||||||||| ||||||| ||||||||||    
T  7905261 gtccttgcaattaggcgtcatttaaaaattagtccttgtaatcgttaatcctg 7905313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 7905375 - 7905423
Alignment:
Q  261 gtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||| |||||||||||| ||||||| || ||||| ||||||||||||||    
T  7905375 gtcaagtcatcaaattagcaaaatggcacgggaatggacaaaaataccc 7905423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 21836319 - 21836279
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaata 306  Q
    |||||||||||| ||||||| |||||||| |||||||||||    
T  21836319 gtcatcaaattaacaaaatggcatgggaatggacaaaaata 21836279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 23455655 - 23455607
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccct 311  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  23455655 cacgtcatcaaattagcaaaatgacatgggaatggacaaaaatacccct 23455607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 22718231 - 22718185
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  22718231 cacgtcatcaaattagcaaaatgacatgggaatggacaaaaataccc 22718185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 27891715 - 27891761
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaata 306  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||    
T  27891715 tgtcacgtcatcaaattagcaaaatgacatgggaatggacaaaaata 27891761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 50504114 - 50504071
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| |||||||||||||||| ||||||||||||||    
T  50504114 gtcatcaaattagcaaaatgacatgggaatggacaaaaataccc 50504071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 22986985 - 22987031
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||    
T  22986985 cacgtcatcaaattagcaaaatgacatgggaatagacaaaaataccc 22987031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 23455088 - 23455134
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  23455088 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 23455134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 27069044 - 27069090
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  27069044 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 27069090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 40316953 - 40316911
Alignment:
Q  267 tcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||| |||||||||||||||| ||||||||||||||    
T  40316953 tcatcaaattagcaaaatgacatgggaatggacaaaaataccc 40316911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 40327027 - 40326985
Alignment:
Q  267 tcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||| |||||||||||||||| ||||||||||||||    
T  40327027 tcatcaaattagcaaaatgacatgggaatggacaaaaataccc 40326985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 50503959 - 50504005
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  50503959 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 50504005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 52816389 - 52816339
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctga 313  Q
    ||||||||||||||| ||||||| ||||||||  |||||||||||||||||    
T  52816389 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctga 52816339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 30641648 - 30641697
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||||||| ||||||| |||||||| |||||||| |||||    
T  30641648 tgtcacgtcatcaaattagcaaaatgtcatgggaatggacaaaattaccc 30641697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 38982562 - 38982513
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  38982562 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 38982513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 56556716 - 56556765
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  56556716 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 56556765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 51859814 - 51859762
Alignment:
Q  198 gtccctgcaattagacgtggtttaaaaattagtctttgtaattgttaatcctg 250  Q
    |||| |||||||||||||  |||||||||||||||||||||| | ||||||||    
T  51859814 gtccttgcaattagacgtaatttaaaaattagtctttgtaatcgctaatcctg 51859762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 55867408 - 55867360
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccct 311  Q
    ||||||||||||||| ||||||||||| ||||  |||||||||||||||    
T  55867408 cacgtcatcaaattagcaaaatgacattggaattgacaaaaatacccct 55867360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 27069199 - 27069156
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||    
T  27069199 gtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 27069156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 39666913 - 39666956
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||    
T  39666913 gtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 39666956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 39701042 - 39701089
Alignment:
Q  262 tcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||||| ||||||| |||||||| ||||||||| ||||    
T  39701042 tcacgtcatcaaattagcaaaatggcatgggaatggacaaaaacaccc 39701089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 147453 - 147495
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaat 305  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||    
T  147453 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaat 147495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 32063630 - 32063584
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||| ||| ||||||||||||||    
T  32063630 cacgtcatcaaattagcaaaatggcatgagaatggacaaaaataccc 32063584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 45463365 - 45463319
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||| ||||    
T  45463365 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaacaccc 45463319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 52573362 - 52573408
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||| ||| ||||||||||||||    
T  52573362 cacgtcatcaaattagcaaaatggcatgagaatggacaaaaataccc 52573408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 52815797 - 52815843
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| ||||||||  |||||||||||||    
T  52815797 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaataccc 52815843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 54858694 - 54858740
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| ||||||||  |||||||||||||    
T  54858694 cacgtcatcaaattagcaaaatggcatgggaacagacaaaaataccc 54858740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 56557291 - 56557241
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctga 313  Q
    ||||||||||||||| ||||||| ||| ||||  |||||||||||||||||    
T  56557291 cacgtcatcaaattagcaaaatggcataggaattgacaaaaatacccctga 56557241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 22923164 - 22923209
Alignment:
Q  206 aattagacgtggtttaaaaattagtctttgtaattgttaatcctga 251  Q
    ||||||||||  ||||||||||||||| |||||| |||||||||||    
T  22923164 aattagacgtcatttaaaaattagtctctgtaatcgttaatcctga 22923209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 22927817 - 22927862
Alignment:
Q  206 aattagacgtggtttaaaaattagtctttgtaattgttaatcctga 251  Q
    ||||||||||  ||||||||||||||| |||||| |||||||||||    
T  22927817 aattagacgtcatttaaaaattagtctctgtaatcgttaatcctga 22927862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 22984096 - 22984141
Alignment:
Q  206 aattagacgtggtttaaaaattagtctttgtaattgttaatcctga 251  Q
    ||||||||||  ||||||||||||||| |||||| |||||||||||    
T  22984096 aattagacgtcatttaaaaattagtctctgtaatcgttaatcctga 22984141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 22997684 - 22997729
Alignment:
Q  206 aattagacgtggtttaaaaattagtctttgtaattgttaatcctga 251  Q
    ||||||||||  ||||||||||||||| |||||| |||||||||||    
T  22997684 aattagacgtcatttaaaaattagtctctgtaatcgttaatcctga 22997729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 38813688 - 38813737
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    |||||| |||||||| ||||||||||||||||  |||||||||| |||||    
T  38813688 cacgtcttcaaattagcaaaatgacatgggaattgacaaaaatatccctg 38813737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 38814293 - 38814244
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| |||||||||||| | |  ||||||||||||||||    
T  38814293 cacgtcatcaaattagcaaaatgacatgagcattgacaaaaatacccctg 38814244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 39667068 - 39667023
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacc 308  Q
    ||||||||||||||| ||||||| |||| ||| |||||||||||||    
T  39667068 cacgtcatcaaattagcaaaatggcatgagaatggacaaaaatacc 39667023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 11523967 - 11524019
Alignment:
Q  198 gtccctgcaattagacgtggtttaaaaattagtctttgtaattgttaatcctg 250  Q
    |||| ||||||||| |||  ||||||||||||||| |||||| ||||||||||    
T  11523967 gtccttgcaattaggcgtcatttaaaaattagtctctgtaatcgttaatcctg 11524019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 25124855 - 25124809
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  25124855 cacgtcatcaaattagcaaaatgacatgggaatggacaaaaataccc 25124809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 35634394 - 35634345
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  35634394 tgtcacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 35634345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 34176572 - 34176623
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccct 311  Q
    ||||| |||||||||||| ||||||| | |||||||||||||||||||||||    
T  34176572 tgtcaggtcatcaaattagcaaaatggcttgggaaaggacaaaaatacccct 34176623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 41353867 - 41353820
Alignment:
Q  261 gtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacc 308  Q
    ||||||||||||||||| |||||||||||| ||| |||||||||||||    
T  41353867 gtcacgtcatcaaattagcaaaatgacatgagaatggacaaaaatacc 41353820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 15230223 - 15230177
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  15230223 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 15230177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 34213898 - 34213947
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  34213898 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 34213947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 34665904 - 34665953
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  34665904 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 34665953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 11761974 - 11762022
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccct 311  Q
    ||||||||||||||| ||||||  |||||||| ||||||||||||||||    
T  11761974 cacgtcatcaaattagcaaaatagcatgggaatggacaaaaatacccct 11762022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 6471824 - 6471867
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaata 306  Q
    ||||||||||||||| |||||||||||||||| ||| |||||||    
T  6471824 cacgtcatcaaattagcaaaatgacatgggaatggataaaaata 6471867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 27500225 - 27500268
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| |||||||||||| ||| ||||||||||||||    
T  27500225 gtcatcaaattagcaaaatgacatgagaatggacaaaaataccc 27500268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 10445627 - 10445581
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| ||||| || ||||||||||||||    
T  10445627 cacgtcatcaaattagcaaaatggcatggaaatggacaaaaataccc 10445581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 21432985 - 21432939
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||| ||||||||| |||||||||||||||| ||| ||||||||||    
T  21432985 cacgttatcaaattagcaaaatgacatgggaatggataaaaataccc 21432939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 34177260 - 34177218
Alignment:
Q  267 tcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||    
T  34177260 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 34177218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 8997984 - 8997943
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaa 301  Q
    |||||||||||||||||| ||||||| |||||||| ||||||    
T  8997984 tgtcacgtcatcaaattagcaaaatggcatgggaatggacaa 8997943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 34214490 - 34214445
Alignment:
Q  267 tcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  34214490 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 34214445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 34666507 - 34666458
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| |||| |||  ||||||||||||||||    
T  34666507 cacgtcatcaaattagcaaaatggcatgagaattgacaaaaatacccctg 34666458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 11674713 - 11674765
Alignment:
Q  198 gtccctgcaattagacgtggtttaaaaattagtctttgtaattgttaatcctg 250  Q
    |||| ||||||||| ||| ||||||||||| |||  |||||||||||||||||    
T  11674713 gtccttgcaattaggcgtcgtttaaaaattcgtccctgtaattgttaatcctg 11674765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 15230071 - 15230111
Alignment:
Q  269 atcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||| ||||||| |||||||| ||||||||||||||    
T  15230071 atcaaattagcaaaatggcatgggaatggacaaaaataccc 15230111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 36325613 - 36325561
Alignment:
Q  198 gtccctgcaattagacgtggtttaaaaattagtctttgtaattgttaatcctg 250  Q
    |||| ||||||||| |||  |||||||||| |||| |||||||||||||||||    
T  36325613 gtccttgcaattaggcgtcatttaaaaattcgtctctgtaattgttaatcctg 36325561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 22870428 - 22870382
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  22870428 cacgtcatcaaattagcaaaatgacatgggaatggacaaaaataccc 22870382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 20153209 - 20153164
Alignment:
Q  264 acgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||    
T  20153209 acgtcatcaaattagcaaaatgacatgggaatggacaaaaataccc 20153164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 36477342 - 36477292
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctga 313  Q
    ||||||||||||||| ||||||| ||||||||  |||||||||||||||||    
T  36477342 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctga 36477292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 39181191 - 39181241
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctga 313  Q
    ||||||||||||||| ||||||| ||||||||  |||||||||||||||||    
T  39181191 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctga 39181241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 17544179 - 17544228
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||| |||||||||||| ||||||| |||||||| ||||||||||||||    
T  17544179 tgtcaagtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 17544228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 17544343 - 17544294
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||| |||||||||||| ||||||| |||||||| ||||||||||||||    
T  17544343 tgtcaagtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 17544294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 20072255 - 20072304
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  20072255 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 20072304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 20072835 - 20072786
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  20072835 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 20072786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 39181762 - 39181713
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  39181762 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 39181713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 20153055 - 20153098
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||    
T  20153055 gtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 20153098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 22298679 - 22298722
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| ||||||||||||||||  |||||||||||||    
T  22298679 gtcatcaaattagcaaaatgacatgggaattgacaaaaataccc 22298722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 33871629 - 33871590
Alignment:
Q  264 acgtcatcaaattatcaaaatgacatgggaaaggacaaaa 303  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  33871629 acgtcatcaaattagcaaaatgacatgggaatggacaaaa 33871590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 314
Target Start/End: Original strand, 36476903 - 36476950
Alignment:
Q  267 tcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctgat 314  Q
    ||||||||||| ||||||| ||||||||  ||||||||||||||||||    
T  36476903 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccctgat 36476950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 3656821 - 3656771
Alignment:
Q  203 tgcaattagacgtggtttaaaaattagtctttgtaattgttaatcctgata 253  Q
    |||||||||||||  |||||||||||||||||||||| | |||| ||||||    
T  3656821 tgcaattagacgtcatttaaaaattagtctttgtaatcgctaattctgata 3656771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 21287946 - 21287904
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaatacc 308  Q
    |||||||||||| ||||||| |||||||| |||||||||||||    
T  21287946 gtcatcaaattagcaaaatggcatgggaatggacaaaaatacc 21287904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 22869739 - 22869785
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||| ||| ||||||||||||||    
T  22869739 cacgtcatcaaattagcaaaatggcatgagaatggacaaaaataccc 22869785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 11741814 - 11741765
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||| |||||||||||| ||||||| ||| |||| ||||||||||||||    
T  11741814 tgtcaggtcatcaaattagcaaaatggcattggaatggacaaaaataccc 11741765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 16533591 - 16533542
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    |||||||| |||||| ||||||| ||||||||  ||||||||||||||||    
T  16533591 cacgtcattaaattagcaaaatggcatgggaattgacaaaaatacccctg 16533542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 24141470 - 24141522
Alignment:
Q  198 gtccctgcaattagacgtggtttaaaaattagtctttgtaattgttaatcctg 250  Q
    ||||||||||||||||||  |||||||||| |||  |||||| ||||||||||    
T  24141470 gtccctgcaattagacgtcatttaaaaattggtccctgtaatcgttaatcctg 24141522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 5734140 - 5734189
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  5734140 tgtcacgtcatcaaattaacaaaatggcatgggaatggacaaaaataccc 5734189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 8898648 - 8898697
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  8898648 tgtcacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 8898697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 50062337 - 50062386
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||||    
T  50062337 cacgtcatcaaattagcaaaatgacatgggaattgacaaaaatacccctg 50062386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 7371424 - 7371470
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  7371424 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 7371470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 31058349 - 31058303
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  31058349 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 31058303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 40714578 - 40714624
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  40714578 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 40714624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 20760793 - 20760752
Alignment:
Q  267 tcatcaaattatcaaaatgacatgggaaaggacaaaaatacc 308  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  20760793 tcatcaaattagcaaaatgacatgggaatggacaaaaatacc 20760752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 46282205 - 46282254
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  46282205 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 46282254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 49093175 - 49093224
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  49093175 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 49093224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 49093779 - 49093730
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  49093779 cacgtcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 49093730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 30326633 - 30326673
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaata 306  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  30326633 gtcatcaaattagcaaaatgacatgggaatggacaaaaata 30326673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 45749865 - 45749913
Alignment:
Q  203 tgcaattagacgtggtttaaaaattagtctttgtaattgttaatcctga 251  Q
    ||||||||| |||  |||||||||||||||||||||| |||||||||||    
T  45749865 tgcaattaggcgtcatttaaaaattagtctttgtaatcgttaatcctga 45749913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 49955755 - 49955703
Alignment:
Q  198 gtccctgcaattagacgtggtttaaaaattagtctttgtaattgttaatcctg 250  Q
    |||| ||||||||| |||  |||||||||||||||||||||| ||||||||||    
T  49955755 gtccttgcaattaggcgtcatttaaaaattagtctttgtaatcgttaatcctg 49955703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 50062917 - 50062865
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    |||||||||||||||||| ||||||| |||| |||  ||||||||||||||||    
T  50062917 tgtcacgtcatcaaattagcaaaatggcatgagaattgacaaaaatacccctg 50062865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 8898806 - 8898763
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||    
T  8898806 gtcatcaaattagcaaaatgacacgggaatggacaaaaataccc 8898763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 17189091 - 17189134
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||    
T  17189091 gtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 17189134  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 32132438 - 32132481
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaata 306  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||    
T  32132438 cacgtcatcaaattagcaaaatgtcatgggaatggacaaaaata 32132481  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 35038589 - 35038632
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaata 306  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||    
T  35038589 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaata 35038632  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 35040903 - 35040860
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||    
T  35040903 gtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 35040860  T

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Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 45750134 - 45750091
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaata 306  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||    
T  45750134 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaata 45750091  T

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Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 49955636 - 49955593
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||    
T  49955636 gtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 49955593  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 13295269 - 13295315
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||||||||| ||  |||||||||||||    
T  13295269 cacgtcatcaaattagcaaaatgacatggaaatagacaaaaataccc 13295315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 28324938 - 28324984
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| ||||| || ||||||||||||||    
T  28324938 cacgtcatcaaattagcaaaatggcatggaaatggacaaaaataccc 28324984  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 49955485 - 49955527
Alignment:
Q  267 tcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||    
T  49955485 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 49955527  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 12905954 - 12905905
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||| |||||||||||| ||||||| |||| ||| ||||||||||||||    
T  12905954 tgtcaagtcatcaaattaacaaaatggcatgagaatggacaaaaataccc 12905905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 46282755 - 46282710
Alignment:
Q  267 tcatcaaattatcaaaatgacatgggaaaggacaaaaatacccctg 312  Q
    ||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  46282755 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccctg 46282710  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 28325093 - 28325053
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaata 306  Q
    |||||||||||| ||||||||||| |||| |||||||||||    
T  28325093 gtcatcaaattagcaaaatgacataggaatggacaaaaata 28325053  T

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Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 307
Target Start/End: Original strand, 19988 - 20035
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatac 307  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||    
T  19988 tgtcacgtcatcaaattagcaaaatggcatgggaatggacaaaaatac 20035  T

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Target: scaffold0328 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 11432 - 11386
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  11432 cacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 11386  T

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Target: scaffold0328; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 11277 - 11320
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||    
T  11277 gtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 11320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 1051 - 1100
Alignment:
Q  260 tgtcacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||| |||||||||||| ||||||| |||||||| ||||||||||||||    
T  1051 tgtcaagtcatcaaattagcaaaatggcatgggaatggacaaaaataccc 1100  T

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Target: scaffold0388 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 12531 - 12486
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaatacc 308  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||    
T  12531 cacgtcatcaaattagcaaaatgacatgggaatagacaaaaatacc 12486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 12376 - 12416
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaata 306  Q
    |||||||||||| ||||||||||||| || |||||||||||    
T  12376 gtcatcaaattagcaaaatgacatggaaatggacaaaaata 12416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 222078 - 222035
Alignment:
Q  266 gtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||    
T  222078 gtcatcaaattaacaaaatggcatgggaatggacaaaaataccc 222035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 221923 - 221969
Alignment:
Q  263 cacgtcatcaaattatcaaaatgacatgggaaaggacaaaaataccc 309  Q
    ||||||||||||||| ||||||| |||||||| | ||||||||||||    
T  221923 cacgtcatcaaattagcaaaatggcatgggaatgaacaaaaataccc 221969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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