View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20481_low_7 (Length: 209)
Name: NF20481_low_7
Description: NF20481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20481_low_7 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: scaffold0004 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 380164 - 379980
Alignment:
| Q |
17 |
cttaatttctctatttgacatgacctagatctgacataggcgaagctggcctg-cttattctaacacctatttgtggctcagattttcatccgtatgctt |
115 |
Q |
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| T |
380164 |
cttaatttctctatttgacatgacctagatctgacataggcgaagctggcctgacttattctaacacctatttgtggctcagattttcatccgtatgctt |
380065 |
T |
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| Q |
116 |
ccaagagtgatacgctacatatataaacaaatccttttggcaccacaaaatttatttattacaaaacatagttcttaaacccatt |
200 |
Q |
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| T |
380064 |
ccaagagtgatacactacatgtatgaacaaatccttttggcaccacaaaatttatttattacaaaacatagttcttaaacccatt |
379980 |
T |
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