View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20482_high_1 (Length: 331)
Name: NF20482_high_1
Description: NF20482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20482_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 43131766 - 43131466
Alignment:
| Q |
12 |
gaatattgtttgcttgtttgtaacttggcctccttgtatgatgcaacacataaaatnnnnnnn-taacctaaacgtttcaacttttattttt-ctcaaat |
109 |
Q |
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| T |
43131766 |
gaatattgtttgcttgtttgtaacttggcctccttatatgatgcaacacataaaataaaaaaaataacctaaacgtttcaactttttttttttctcaaat |
43131667 |
T |
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| Q |
110 |
aaacgatacaacttttattcggattaaatctaatgcaacttttattggaccgtgagaagagtgtcagggatcaaattaggtcttcactgataattcttca |
209 |
Q |
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| T |
43131666 |
aaacgatacaacttttattcggattaaatctaatgcaacttttattggaccgtgagaagagtgtcagggatcaaattaggtcttcattgaaaattcttca |
43131567 |
T |
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| Q |
210 |
atctcaagctnnnnnnnnttcattggtgttttcttatcgcgctcttttgatctcttccaaataccctattgagttccgtatttcattctatgaaaagtat |
309 |
Q |
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| T |
43131566 |
atctcaaact-aaaaaaattcattggtgttttcttatcgcactcttt---tctcttccaaataccctattgagttccgtatttcattctatgaaaagcat |
43131471 |
T |
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| Q |
310 |
aagat |
314 |
Q |
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||||| |
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| T |
43131470 |
aagat |
43131466 |
T |
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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 306
Target Start/End: Original strand, 48212416 - 48212587
Alignment:
| Q |
130 |
ggattaaatctaatgcaacttttattggaccgtgagaagagtgtcagggatcaaattaggtcttcactgataattcttcaatctcaagctnnnnnnnntt |
229 |
Q |
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| T |
48212416 |
ggattaaatctaatgcaatttttattagactgtgagaagagtgtcatggatcaaattaggtcttcactcaaaattcttcaatatcaagc--aaaaaaatt |
48212513 |
T |
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| Q |
230 |
cattggtgttttcttatcgcgctcttttgatctcttccaaataccctattgagttccgtatttcattctatgaaaag |
306 |
Q |
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| T |
48212514 |
cattggtgttttcttatggcactctt---atctctttcaaatacactattgaatttcagattttattttatgaaaag |
48212587 |
T |
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