View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20482_low_2 (Length: 249)
Name: NF20482_low_2
Description: NF20482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20482_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 4586509 - 4586743
Alignment:
| Q |
1 |
atcaaacataatgtatgatatagtcttttcaatgataaaaattgcaactcaatgctcatttgaaatttggttacgtgcttatgattgtttaacgtataca |
100 |
Q |
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| T |
4586509 |
atcaaacaaaatgtatgatatagtcttttcaatgatgaaaattgcaactcaatgctcatgtgaaatttggttacgtgcttatgattgtttaacatataca |
4586608 |
T |
|
| Q |
101 |
acaattttgtgaaaggtatgaattataaatgagattccaataactcatgcaccttacccaaaatatgtagcgagaggcgccaaaccccaaatatgcaagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4586609 |
acaattttgtgaaaggtatgaattataaatgagattccaataactcatgcaccttaccccaaatatgtagcgagaggcgccaaaccccaaatatgcaagg |
4586708 |
T |
|
| Q |
201 |
ctctaaaactacataaaattttatatttcaccaat |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
4586709 |
ctctaaaactacataaaattttatatttcaccaat |
4586743 |
T |
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