View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20482_low_4 (Length: 232)
Name: NF20482_low_4
Description: NF20482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20482_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 1184453 - 1184538
Alignment:
| Q |
136 |
tgggcagtttcatgttccagttcaatctcaaaaaggaaacatgaatcgaaagtcaaaacctttctccatgaagggagtgcaagacc |
221 |
Q |
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| T |
1184453 |
tgggcagtttcatgttccagttcaatctcaaaaaggaaacatgaatcgaaagtcaaaacctttctccatgaagggagtgcaagacc |
1184538 |
T |
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Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 16993345 - 16993260
Alignment:
| Q |
136 |
tgggcagtttcatgttccagttcaatctcaaaaaggaaacatgaatcgaaagtcaaaacctttctccatgaagggagtgcaagacc |
221 |
Q |
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| T |
16993345 |
tgggcagtttcatgttccagttcaatctcaaaaaggaaacatgaatcgaaagtcaaaacttttctccatgaagggagtgcaagacc |
16993260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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