View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20483_high_12 (Length: 313)
Name: NF20483_high_12
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20483_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 31851287 - 31851572
Alignment:
| Q |
18 |
ggaaaaagaattcctcatctctcttaaatatctcatccaccttctcagcagatttatcaaatgctagcttcttagctgtcttgtctagtgcactcacaat |
117 |
Q |
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| T |
31851287 |
ggaaaaagaattcctcatctctcttaaatatctcatccaccttctcagcagatttatcaaatgctagcttcttagctgtcttgtctagtgcactcacaat |
31851386 |
T |
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| Q |
118 |
gttgttcttccctgcaaaagcaagcttcttattcttttgtgcattaacctcaaagcaaactatcttgaggttattgttcttggaagctatggttacaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31851387 |
gttgttcttccctgcaaaagcaagcttcttgttcctttgtgcattaacctcaaagcaaactatcttgaggttattgttcttggaagctatggttacaaaa |
31851486 |
T |
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| Q |
218 |
ggatgaccagctgggacaacaaacactgttcctgaccttaatcttgcattgattttttggtatgaagtgctgctactcctcctttg |
303 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31851487 |
ggatgaccagctgggacaacaaacactgttcctggccttaatcttgcattgattttttggtatgaagtgctgctactccttctttg |
31851572 |
T |
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