View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20483_high_13 (Length: 299)
Name: NF20483_high_13
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20483_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 56 - 277
Target Start/End: Original strand, 11504981 - 11505202
Alignment:
| Q |
56 |
ttatttttgaaagatgtaagaattatcatatttgcataggtgtccattgttcatgagacaatactcttttatggatggattgccacttaagacaggtatg |
155 |
Q |
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| T |
11504981 |
ttatttttgaaagatgtaagaattatcatatttgcataggtgtccagtgttcatgagacaatactcttttatggatggattgccacttaagacaggtatg |
11505080 |
T |
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| Q |
156 |
attccattttgatgatgggaataggtttcaagagattatattttaattatcttttgctaaaatcataatctgaatgtgatatatgttattcattttctta |
255 |
Q |
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| T |
11505081 |
attccattttgatgatgggaataggtttcaagagattatattttaattatcttttgctaaaatcataatttgaatgtgatatatgttattcattttctta |
11505180 |
T |
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| Q |
256 |
tatctatacaatcgaagcggaa |
277 |
Q |
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| T |
11505181 |
tatctatacaatcaaagcggaa |
11505202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 11505218 - 11505252
Alignment:
| Q |
217 |
atcataatctgaatgtgatatatgttattcatttt |
251 |
Q |
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| T |
11505218 |
atcataatttgaatgtgatatatgttattcatttt |
11505252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 46009028 - 46009078
Alignment:
| Q |
82 |
catatttgcataggtgtccattgttcatgagacaatactcttttatggatg |
132 |
Q |
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| T |
46009028 |
catatttgcataggtgtccaattttcttgagataatgctcttttatggatg |
46009078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 3077286 - 3077376
Alignment:
| Q |
181 |
tttcaagagattatattttaattatcttttgctaaaatcataatctgaatgtgatatatgttattcattttcttatatctatacaatcgaag |
272 |
Q |
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| T |
3077286 |
tttcaagagcttatattttaattatctat-gctaaaatcgtaatctgataatgctatatgttattcattttcttatatctatacaatggaag |
3077376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 6097310 - 6097219
Alignment:
| Q |
82 |
catatttgcataggtgtccattgttcatgagacaatactcttttatggatgga-----ttgccacttaagacaggtatgattccattttgat |
168 |
Q |
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| T |
6097310 |
catatttgcataggtgtccaattttcttgagacaatgctcttttatggatggatgatcttgccacttgagacaggtatgattctattttgat |
6097219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 4636354 - 4636301
Alignment:
| Q |
82 |
catatttgcataggtgtccattgttcatgagacaatactcttttatggatggat |
135 |
Q |
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|||||||||||||||||||| | ||| ||||| | | ||||||||||||||||| |
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| T |
4636354 |
catatttgcataggtgtccaattttcttgagatagtgctcttttatggatggat |
4636301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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