View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20483_high_14 (Length: 291)
Name: NF20483_high_14
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20483_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 43279968 - 43280227
Alignment:
| Q |
13 |
ttatgagttggatttgtatactttgaattacattccgggacaaaagtttttggtataggaaatgacgtatttcttagaaggaacatcaaagacaaataaa |
112 |
Q |
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| T |
43279968 |
ttatgagttggatttgtatactttgaattacattccgggacaaaagtttttggtataggtaatgacgtatttcttagaaggaacatcaaagacaaataaa |
43280067 |
T |
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| Q |
113 |
acatccaagtaatgataatgaaatgttatgaaggaatagaagtttctaaaatcagaagaggacgatcaagattaatattnnnnnnncttcataagctaga |
212 |
Q |
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| T |
43280068 |
acatccaagtaatgataatgaaatgttatgaaggaatagaagtttctaaaatcagaagaggacgatcaagattaatattaaaaaaacttcataagctaga |
43280167 |
T |
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| Q |
213 |
tta--atatgacattgttttctcagtctctgtcgcttgtcgatggttttattcgtccatac |
271 |
Q |
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| T |
43280168 |
ttaatatatgacattgttttctcagtctctgtcgcttgtcgatgg-tttattcgtccatac |
43280227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 32725912 - 32725814
Alignment:
| Q |
26 |
ttgtatactttgaattacattccgggacaaaagtttttggtataggaaatgacgtatttcttagaaggaacatcaaagacaaataaaacatccaagtaat |
125 |
Q |
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||||||||||||||||||||| ||||| |||||||||||| ||| |||||||| || |||||| || |||| ||||||||||||||| ||||||||| |
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| T |
32725912 |
ttgtatactttgaattacatttcgggataaaagtttttgg-gtagaaaatgacgaatatcttaggtggtacattgaagacaaataaaacacccaagtaat |
32725814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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