View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20483_high_15 (Length: 288)
Name: NF20483_high_15
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20483_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 361214 - 360954
Alignment:
| Q |
17 |
acatgtatttcaaggcaaagttggattctgggttataatgatacaacaattgattgttcaggttgcttcaaccattgtgtattcagtcactggtggaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
361214 |
acatgtatttcaaggcaaagttggattctgggttataatgatacaacaattgattgttcaggttgcttcaaccattgtgtattcagtcactggtggaaaa |
361115 |
T |
|
| Q |
117 |
tcacttaagaagttctgtgaaataatgactccaataatgccaatgtttgatgaaattagacaaacatattatatttgcttctttgtttgtatacagttac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
361114 |
tcacttaagaagttctgtgaaataatgactccaataatgccaatgtttgatgaaattagacaaacatattatatctgcttctttgtttgtatacagttac |
361015 |
T |
|
| Q |
217 |
tcctttcacaaattcctaacttcaatactttaaaaggaatctcgttgctcgcggcattcat |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
361014 |
tcctttcacaaattcctaacttcaatactttaaaaggaatctcgctgctcgcggcattcat |
360954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University