View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20483_high_19 (Length: 250)
Name: NF20483_high_19
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20483_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 46521223 - 46521467
Alignment:
| Q |
1 |
tgcttattgaggttagttctgttttgttacaaaagatttcgtataggtatataattgaagcaatacccttgtaccttaatttgtttcaccaaatccacat |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46521223 |
tgcttattgaggttagttctgttttgttacaagagattttgtataggtatataattgaagcaatacccttgtaccttaatttgtttcaccaaatccacat |
46521322 |
T |
|
| Q |
101 |
aataagaaaacaaatacttgggttgcattaagtcaattcctttcagc----ttggtttatatagttcagagttatagagcatatataggttcataaagac |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46521323 |
aataagaaaacaaatacttgggttgcattaagtcaattcctttcagcttggttggtttatagagttcagagttatagagcatatataggttcataaagac |
46521422 |
T |
|
| Q |
197 |
taaagagtgagttaaaagaaatattttattttatgtgagaattat |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46521423 |
taaagagtgagttaaaagaaatattttattttatgtgagaattat |
46521467 |
T |
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