View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20483_high_25 (Length: 218)

Name: NF20483_high_25
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20483_high_25
NF20483_high_25
[»] chr6 (13 HSPs)
chr6 (1-195)||(7132105-7132299)
chr6 (109-197)||(7138059-7138147)
chr6 (109-197)||(7135136-7135224)
chr6 (6-195)||(6423710-6423899)
chr6 (43-185)||(6427023-6427165)
chr6 (1-100)||(6403369-6403468)
chr6 (39-98)||(6410532-6410591)
chr6 (6-76)||(6594139-6594209)
chr6 (116-195)||(19633012-19633094)
chr6 (1-96)||(7993698-7993793)
chr6 (38-148)||(8913529-8913639)
chr6 (45-119)||(10579302-10579376)
chr6 (130-194)||(10579161-10579225)
[»] chr1 (1 HSPs)
chr1 (6-166)||(33161000-33161160)
[»] chr4 (1 HSPs)
chr4 (39-76)||(3438186-3438223)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 7132105 - 7132299
Alignment:
Q  1 tcagaaacatgttcatcattcagaaaatatgtgcacctaagatccaaatgttgtatacatcgccacttggataacatacagtgaattccattaatgaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132105 tcagaaacatgttcatcattcagaaaatatgtgcacctaagattcaaatgttgtatacatcgccacttggataacatacagtgaattccattaatgaagt 7132204  T
Q  101 ttgtttgattgttcaccaaagggtgaccaaggttgagttctttaagcattggaaaacaatcggcaataagtaacagatcgttgttgtagagaaac 195  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132205 tagtttgattgttcaccaaagggtgaccaaggttgagttctttaagcattggaaaacaatcggcaataagtaacagatcgttgttgtagagaaac 7132299  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 7138059 - 7138147
Alignment:
Q  109 ttgttcaccaaagggtgaccaaggttgagttctttaagcattggaaaacaatcggcaataagtaacagatcgttgttgtagagaaacgt 197  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7138059 ttgtgcaccaaaaggtgaccaaggttgagttctttaagcattggaaaacaatcggcaataagtaacagatcgttgttgtagagaaacgt 7138147  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 7135136 - 7135224
Alignment:
Q  109 ttgttcaccaaagggtgaccaaggttgagttctttaagcattggaaaacaatcggcaataagtaacagatcgttgttgtagagaaacgt 197  Q
    |||| ||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7135136 ttgtgcaccaaaaggtgaccaaggttgagttctttgtgcattggaaaacaatcggcaataagtaacagatcgttgttgtagagacacgt 7135224  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 6 - 195
Target Start/End: Original strand, 6423710 - 6423899
Alignment:
Q  6 aacatgttcatcattcagaaaatatgtgcacctaagatccaaatgttgtatacatcgccacttggataacatacagtgaattccattaatgaagtttgtt 105  Q
    |||||||| ||| |||||||||||  ||||   ||||| |||||||||||||||| | ||||||||||||| |  | |||||||||||||||| || |||    
T  6423710 aacatgttgatccttcagaaaataaatgcagtcaagattcaaatgttgtatacattgacacttggataacaaattgcgaattccattaatgaaattagtt 6423809  T
Q  106 tgattgttcaccaaagggtgaccaaggttgagttctttaagcattggaaaacaatcggcaataagtaacagatcgttgttgtagagaaac 195  Q
    | || | | ||||||||| |    |||||||||||||| |||| ||| ||||||| ||| | ||||||||| ||| ||||| ||||||||    
T  6423810 tcatcgatgaccaaagggcgtttgaggttgagttctttgagcaatgggaaacaattggccacaagtaacaggtcggtgttggagagaaac 6423899  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 6427023 - 6427165
Alignment:
Q  43 tccaaatgttgtatacatcgccacttggataacatacagtgaattccattaatgaagtttgtttgattgttcaccaaagggtgaccaaggttgagttctt 142  Q
    |||||||||||||||||| | ||||||||||||||||||||||||  |||||||||||| |  | |||| | ||||||||||||   |||||||||| ||    
T  6427023 tccaaatgttgtatacatggacacttggataacatacagtgaattgaattaatgaagttaggcttattgatgaccaaagggtgatggaggttgagttgtt 6427122  T
Q  143 taagcattggaaaacaatcggcaataagtaacagatcgttgtt 185  Q
    | ||||  || ||||||||  ||||  || |||||||||||||    
T  6427123 tgagcaaagggaaacaatcaacaatgggtgacagatcgttgtt 6427165  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 6403369 - 6403468
Alignment:
Q  1 tcagaaacatgttcatcattcagaaaatatgtgcacctaagatccaaatgttgtatacatcgccacttggataacatacagtgaattccattaatgaagt 100  Q
    |||| |||||||  |||||||||||||||  ||    ||||||||||||||||||||||||  ||||||||||||| | |||  ||||||||||| ||||    
T  6403369 tcagcaacatgtaaatcattcagaaaataactgttattaagatccaaatgttgtatacatctacacttggataacagagagtatattccattaataaagt 6403468  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 6410532 - 6410591
Alignment:
Q  39 aagatccaaatgttgtatacatcgccacttggataacatacagtgaattccattaatgaa 98  Q
    |||||||| |||||||| |||| | ||||||||||||| | |||||||||||||||||||    
T  6410532 aagatccatatgttgtaaacattggcacttggataacagatagtgaattccattaatgaa 6410591  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 6594209 - 6594139
Alignment:
Q  6 aacatgttcatcattcagaaaatatgtgcacctaagatccaaatgttgtatacatcgccacttggataaca 76  Q
    |||||||| |||||||||||||   | | || |||||| |||||||||||||||||| |||||||||||||    
T  6594209 aacatgttgatcattcagaaaacgagcgtacttaagattcaaatgttgtatacatcgacacttggataaca 6594139  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 19633012 - 19633094
Alignment:
Q  116 ccaaagggtgaccaaggttgagttctttaagcattggaaaacaatcggcaa---taagtaacagatcgttgttgtagagaaac 195  Q
    ||||||||| | | |||||||||||||| | || ||| |||||||||||||   | |||||||| ||||||||||||||||||    
T  19633012 ccaaagggtaagcgaggttgagttctttcaacaatgggaaacaatcggcaatgttgagtaacagttcgttgttgtagagaaac 19633094  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 7993793 - 7993698
Alignment:
Q  1 tcagaaacatgttcatcattcagaaaatatgtgcacctaagatccaaatgttgtatacatcgccacttggataacatacagtgaattccattaatg 96  Q
    |||| |||||||  |||||||||||||||  | |   ||||||| ||||||||||||||||| |||||||| |||| | |||||| | ||||||||    
T  7993793 tcagcaacatgtagatcattcagaaaataaataccattaagatctaaatgttgtatacatcgacacttggacaacaaatagtgaaattcattaatg 7993698  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 8913639 - 8913529
Alignment:
Q  38 taagatccaaatgttgtatacatcgccacttggataacatacagtgaattccattaatgaagtttgtttgattgttcaccaaagggtgaccaaggttgag 137  Q
    ||||| |||||||||||| |||| | ||||||||||||| |  |||||||  ||||| ||  ||  | |||| ||| ||||| | ||||| |||||||||    
T  8913639 taagaaccaaatgttgtaaacattgacacttggataacaaatggtgaatttaattaaagacattactgtgatagttgaccaaggtgtgactaaggttgag 8913540  T
Q  138 ttctttaagca 148  Q
    |||||||||||    
T  8913539 ttctttaagca 8913529  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 10579376 - 10579302
Alignment:
Q  45 caaatgttgtatacatcgccacttggataacatacagtgaattccattaatgaagtttgtttgattgttcaccaa 119  Q
    ||||||||| |||||| | ||||| ||||||| | ||||||||||||||||||| |  ||| ||||||| |||||    
T  10579376 caaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagttcgattgttgaccaa 10579302  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 10579225 - 10579161
Alignment:
Q  130 aggttgagttctttaagcattggaaaacaatcggcaataagtaacagatcgttgttgtagagaaa 194  Q
    |||||||||||||| |||| ||| |||||||||||||  |||||||  || || |||||||||||    
T  10579225 aggttgagttctttgagcaatgggaaacaatcggcaacgagtaacaagtcatttttgtagagaaa 10579161  T

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Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 6 - 166
Target Start/End: Original strand, 33161000 - 33161160
Alignment:
Q  6 aacatgttcatcattcagaaaatatgtgcacctaagatccaaatgttgtatacatcgccacttggataacatacagtgaattccattaatgaagtttgtt 105  Q
    |||||||| ||||||||||||||| |||    | |||||||||| ||||||| || | || |||||||| | | |||||| ||||||||||||||| ||     
T  33161000 aacatgttgatcattcagaaaataagtgtgatttagatccaaatattgtatatattgacagttggataagagagagtgaaatccattaatgaagttagtg 33161099  T
Q  106 tgattgttcaccaaagggtgaccaaggttgagttctttaagcattggaaaacaatcggcaa 166  Q
    |||||||| | |  ||||||||| |||||||||| ||| ||||  || |||||||||||||    
T  33161100 tgattgttgaactgagggtgaccgaggttgagttttttgagcaaagggaaacaatcggcaa 33161160  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 3438223 - 3438186
Alignment:
Q  39 aagatccaaatgttgtatacatcgccacttggataaca 76  Q
    |||||||||||||||||||||| | |||||||||||||    
T  3438223 aagatccaaatgttgtatacattgacacttggataaca 3438186  T

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