View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20483_high_9 (Length: 417)
Name: NF20483_high_9
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20483_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 23 - 399
Target Start/End: Complemental strand, 13674569 - 13674193
Alignment:
| Q |
23 |
gtacggacaaaggtagttaactatcaattatgtatggaaacaagaaccttgcaattaattaaaactgatgaaaatgggattgaaacaatggcattgcaga |
122 |
Q |
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| T |
13674569 |
gtacggacaaaggtagttaactatcaattatgtatggaaacaagaaccttgcaattgattgaaactgatgaaattgggattgaaacaatggcattgcaga |
13674470 |
T |
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| Q |
123 |
gtcaaaaagatnnnnnnnnncactctgctgggatcatttctatccattacattgttgatgcaccctacaggttcatgctagattacaagcctacttagct |
222 |
Q |
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| T |
13674469 |
gtcaaaaagataaaaaaaaacactctgctgggatcatttctatccattacattgttgatgcaccctacaggttcatgctagattacaagcctacttagct |
13674370 |
T |
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| Q |
223 |
tgaacaaaaacacaggcctgcgatgacttcagattaagccacacacaaactgctacaacaatgatcattacatacccttcacacatatatatacaaaggg |
322 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13674369 |
tgaacaaaaacacaagcctgcgatgacttcagattaagccacacacaaactgctacaacaatgatcattacatacccttcacacatatatatacaaaggg |
13674270 |
T |
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| Q |
323 |
aggcacaagatatctcaaaatgcagaacatagcacacatgaaagactaagaaacgatcactccatgactaattccct |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13674269 |
aggcacaagatatctcaaaatgcagaacatagcacacatgaaagactaagaaacgatcactccatgactaattccct |
13674193 |
T |
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