View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20483_low_1 (Length: 929)
Name: NF20483_low_1
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20483_low_1 |
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| [»] scaffold0635 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 849; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 849; E-Value: 0
Query Start/End: Original strand, 1 - 916
Target Start/End: Original strand, 51839708 - 51840626
Alignment:
| Q |
1 |
acttgaaaaatggcaaacaaaaccgaatcatcaacaagcagataacgacattacaggatgaaatactctaaacaaacatctccacaagaatgaaatttca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51839708 |
acttgaaaaatggcaaacaaaaccaaatcatcaacaagcagataacgacattacaggatgaaatactctaaacaaacatctccacaagaatgaaatttca |
51839807 |
T |
|
| Q |
101 |
cattgtcaactatatcaacgatggctgattctttgttttgaaacatctgaaagttgtgttccttccaaataattcaactactagacgattaaattattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51839808 |
cattgtcaactatatcaacgatggctgattctttgttttgaaacatctgaaagttgtgttccttccaaataattcaactactagacgattaaattattga |
51839907 |
T |
|
| Q |
201 |
agacaaatgtgaatatccttcctaaagagatgactgtcggcaaactaggcagcatgcttgccaatattagatagaagtgtgctagatatcccttgccact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
51839908 |
agacaaatgtgaatatccttcctaaagagatgactgtcggcaaactaggcagcatgcttgccaatattagatagaagcgtcctagatatcccttgccact |
51840007 |
T |
|
| Q |
301 |
acaaaatggggtaccaaacttccgtgaaaaaattacaattcaagaacaaatcattcaccgattcctccatcccataatcacaagatcttggatgaagaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51840008 |
acaaaatggggtaccaaacttccgtgaaaaaattacaattcaagaacaaataattcaccgattcctccatcccataatcacaagatcttggatgaagaaa |
51840107 |
T |
|
| Q |
401 |
tacgcacctaaccaaattatctttagttgaaagccttttattcagttgcctctacgcaaatagagacactttgagatacaccactttattttaaatgatg |
500 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51840108 |
tacgcacctaaccaaattatctttagttggaagtcttttattcagttgcctctacgtaaatagagacactttgagatacaccactttatttcaaatgatg |
51840207 |
T |
|
| Q |
501 |
ttcgtgaaagacgcttgagcttgctaatcatcatacatcaacaaattg---actccttttatcgagtaaccttgtacaatatctagtttccaaaaccatg |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51840208 |
ttcgtgaaagacgcttgagcttgctaatcatcatacatcaacaaattgtaaactccttttaccgagtaaccttgtacaatatctagtttccaaaaccaaa |
51840307 |
T |
|
| Q |
598 |
tatttgcactagaaacttgcaaaacaatgttatccaacaaagaacaacactttgcaaccagttcctccttccgagcaaaaagcctcttccacctccattc |
697 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51840308 |
tatttgcactagaaacttgcaaaacaatgttatccaacaaagaacaacactttgcaaccagttcctccttccgagcaaaaagcctcttccacctccattc |
51840407 |
T |
|
| Q |
698 |
ttcgtcctcaacccctcattctaatctcctcttctcaatgactgtaatattagaatcaacatgcaaataaaaaatccgactaaatctatcacgtaacaaa |
797 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51840408 |
ttcaccctcaacccctcattctaatctcctcttctcaatgacggtaatattagaatcaacatgcaaataaaaaatccgactaaatctatcacgtaacaaa |
51840507 |
T |
|
| Q |
798 |
cccccttccaaccaaggatcattctaagaagagaaactttcaccattacataggcgacaacccaaactaacctcaaatcaacctctctcccgcacaccta |
897 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51840508 |
cccccttccaaccaaggatcattctaagaagagaaactttcaccattacataggcgacaacccaaactaacctcaaatcaacctctctcccgcacaccta |
51840607 |
T |
|
| Q |
898 |
ctccctatctaactccaga |
916 |
Q |
| |
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||||||||||||||||||| |
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| T |
51840608 |
ctccctatctaactccaga |
51840626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0635 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 796 - 903
Target Start/End: Original strand, 1306 - 1413
Alignment:
| Q |
796 |
aacccccttccaaccaaggatcattctaagaagagaaactttcaccattacataggcgacaacccaaactaacctcaaatcaacctctctcccgcacacc |
895 |
Q |
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|||||||||||| ||||||||| || || ||||||||||||||||||||| || | |||| ||||| || || |||| |||||| ||| |||| || |
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| T |
1306 |
aacccccttccagccaaggatcgtttcaaaaagagaaactttcaccattacctacgtgacacaccaaattagccgcaaaccaacctgcctcaggcacgcc |
1405 |
T |
|
| Q |
896 |
tactccct |
903 |
Q |
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|||||||| |
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| T |
1406 |
tactccct |
1413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 796 - 903
Target Start/End: Complemental strand, 10107478 - 10107371
Alignment:
| Q |
796 |
aacccccttccaaccaaggatcattctaagaagagaaactttcaccattacataggcgacaacccaaactaacctcaaatcaacctctctcccgcacacc |
895 |
Q |
| |
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|||||||||||| ||||||||| || || ||||||||||||||||||||| || | |||| ||||| || || |||| |||||| ||| |||| || |
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| T |
10107478 |
aacccccttccagccaaggatcgtttcaaaaagagaaactttcaccattacctacgtgacacaccaaattagccgcaaaccaacctgcctcaggcacgcc |
10107379 |
T |
|
| Q |
896 |
tactccct |
903 |
Q |
| |
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|||||||| |
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| T |
10107378 |
tactccct |
10107371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 43941349 - 43941395
Alignment:
| Q |
127 |
gattctttgttttgaaacatctgaaagttgtgttccttccaaataat |
173 |
Q |
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||||||||||||||||| |||| || |||||||||||| |||||||| |
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| T |
43941349 |
gattctttgttttgaaagatcttaatgttgtgttcctttcaaataat |
43941395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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