View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20483_low_10 (Length: 406)
Name: NF20483_low_10
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20483_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 3733224 - 3732836
Alignment:
| Q |
1 |
tgcaaaaattattgcccttaaatacatgtgcatataaattaaattcatagttctatttaaaagagaattttattacgcatttatcaaacaaagagaagtt |
100 |
Q |
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| T |
3733224 |
tgcaaaaattattgcccttaaatacatgtgcatataaattaaattcatagttctatttaaaagagaattttattacgcatttatcaaacaaagagaagtt |
3733125 |
T |
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| Q |
101 |
tattatgatannnnnnnnn---attaattcatatgattattttttaatcaaagaatatatatgttccacaagttgattaaaaagaaaagataccgaactt |
197 |
Q |
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|||||| ||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3733124 |
tattattatatagtttttttttattaattcatatgattattttttaattaaagaatatgtatgttccacaagttgattaaaaagaaaagataccgaactt |
3733025 |
T |
|
| Q |
198 |
ccattctcagttttcgcgctttcttggaacgcaggcaattccaattcgatccttaacatcatgtctgcttcacacaacaattattattattcttcattct |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3733024 |
ccattctcagttttcgcgctttcttggaacgcaggcaattccaattcgatccttaacatcatgtctgcttcacacaacaattat---tattcttcattct |
3732928 |
T |
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| Q |
298 |
acttcgtaccttacttccttcttgtaagtaatgcnnnnnnnnnnctttatgtttcttcctacatttcaaatttttcatatgaggggcttattat |
391 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3732927 |
acttcgtaccttacttccttcttgtaagtaatgc--ttttttttctttatgtttcttcctacatttcaaatttttcatatgaggggcttattat |
3732836 |
T |
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