View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20483_low_11 (Length: 316)

Name: NF20483_low_11
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20483_low_11
NF20483_low_11
[»] chr4 (7 HSPs)
chr4 (220-300)||(9601800-9601880)
chr4 (13-106)||(9601970-9602063)
chr4 (13-81)||(9581063-9581131)
chr4 (13-81)||(9586758-9586826)
chr4 (43-79)||(9593148-9593184)
chr4 (109-162)||(9581000-9581051)
chr4 (109-162)||(9586695-9586746)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 9601880 - 9601800
Alignment:
Q  220 attcaaatttccatacaagtatctgtttgctgcctcttctcattcgcaaatatcatctcccatctactgccaccatgatac 300  Q
    |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||    
T  9601880 attcaaatctccatacaagtatctgtttgctgcctcctctcattcacaaatatcatctcccatctaccgccgccatgatac 9601800  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 9602063 - 9601970
Alignment:
Q  13 aaatatcatggttattacacggtctcgaactggatggccattaatgtagcttgaacaatctacttcaccagccttttaatgttccttattatac 106  Q
    ||||||| | ||||||||  ||||| || ||| | | |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  9602063 aaatatcgtagttattacgaggtcttgatctgaacgaccattaatgtagcttgaacaatatacttcaccagccttttaatgttctttattatac 9601970  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 9581131 - 9581063
Alignment:
Q  13 aaatatcatggttattacacggtctcgaactggatggccattaatgtagcttgaacaatctacttcacc 81  Q
    ||||||||| |||||||    |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  9581131 aaatatcatcgttattatgacgtcttgaactggatggccattaatgtagcttgaataatctacttcacc 9581063  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 9586826 - 9586758
Alignment:
Q  13 aaatatcatggttattacacggtctcgaactggatggccattaatgtagcttgaacaatctacttcacc 81  Q
    ||||||||| |||||||    |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  9586826 aaatatcatcgttattatgacgtcttgaactggatggccattaatgtagcttgaataatctacttcacc 9586758  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 9593184 - 9593148
Alignment:
Q  43 tggatggccattaatgtagcttgaacaatctacttca 79  Q
    |||||||||||||||||||||||||||||||||||||    
T  9593184 tggatggccattaatgtagcttgaacaatctacttca 9593148  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 9581051 - 9581000
Alignment:
Q  109 tctaacgagtttttggtgttatgtctgcaaccttcctataataagcataagtgt 162  Q
    |||||||||||||||||  |||||||  ||||||| ||||||||||||||||||    
T  9581051 tctaacgagtttttggt--tatgtctaaaaccttcttataataagcataagtgt 9581000  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 9586746 - 9586695
Alignment:
Q  109 tctaacgagtttttggtgttatgtctgcaaccttcctataataagcataagtgt 162  Q
    |||||||||||||||||  |||||||  ||||||| ||||||||||||||||||    
T  9586746 tctaacgagtttttggt--tatgtctaaaaccttcttataataagcataagtgt 9586695  T

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