View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20483_low_17 (Length: 274)

Name: NF20483_low_17
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20483_low_17
NF20483_low_17
[»] chr1 (4 HSPs)
chr1 (19-269)||(32593084-32593344)
chr1 (19-161)||(51823947-51824089)
chr1 (19-127)||(31527057-31527165)
chr1 (19-136)||(37030396-37030513)
[»] chr3 (5 HSPs)
chr3 (21-159)||(49211761-49211899)
chr3 (21-143)||(49207187-49207309)
chr3 (28-143)||(49190950-49191065)
chr3 (31-136)||(49187262-49187367)
chr3 (31-134)||(49202242-49202345)
[»] chr8 (1 HSPs)
chr8 (27-120)||(26756236-26756329)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 32593344 - 32593084
Alignment:
Q  19 gcatctgacaatgctttctgtgcttctgcctctgccttcttctcatacagaattgcttctgattctttttgtttcttgtataattcccagttagcctctt 118  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32593344 gcatctgccaatgctttctgtgcttctgcctctgccttcttctcatacagaattgcttctgattctttttgtttcttgtataattcccagttagcctctt 32593245  T
Q  119 gtacctaaaccatccaaaatttcaactagtacttaaaaaata-------------attcatctagcatacagcctactttgttatgttttacttttaaat 205  Q
    |||||||||||||||||||||||||| |||||||||||||||             |||||||||||||||| ||||||||||||||||||||||||||||    
T  32593244 gtacctaaaccatccaaaatttcaaccagtacttaaaaaataaacattgaaaatcattcatctagcatacaacctactttgttatgttttacttttaaat 32593145  T
Q  206 aactgtttcatgttnnnnnnnttgacaaggtttggttggtagtaataataattccatattcttc 269  Q
    ||||||||||||||       |||||||||||||||||||||   |||||||||||||||||||    
T  32593144 aactgtttcatgttaaaaaaattgacaaggtttggttggtag---taataattccatattcttc 32593084  T

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Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 51823947 - 51824089
Alignment:
Q  19 gcatctgacaatgctttctgtgcttctgcctctgccttcttctcatacagaattgcttctgattctttttgtttcttgtataattcccagttagcctctt 118  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  51823947 gcatctgccaatgctttctgtgcttctgcctctgccttcttctcgtacagaattgcttctgcttctttttgtttcttgtataattcccagttagcctctt 51824046  T
Q  119 gtacctaaaccatccaaaatttcaactagtacttaaaaaataa 161  Q
    |||| |||||||| || ||||||||| ||||||||||||||||    
T  51824047 gtacataaaccattcagaatttcaaccagtacttaaaaaataa 51824089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 31527057 - 31527165
Alignment:
Q  19 gcatctgacaatgctttctgtgcttctgcctctgccttcttctcatacagaattgcttctgattctttttgtttcttgtataattcccagttagcctctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  31527057 gcatctgacaatgctttctgtgcttctgcctctgccttcttctcatacagaattgcttctgcttctttttgtttcctgtataattcccagttagcctctt 31527156  T
Q  119 gtacctaaa 127  Q
    |||||||||    
T  31527157 gtacctaaa 31527165  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 37030396 - 37030513
Alignment:
Q  19 gcatctgacaatgctttctgtgcttctgcctctgccttcttctcatacagaattgcttctgattctttttgtttcttgtataattcccagttagcctctt 118  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||| ||||| |  |||||||| || ||||    
T  37030396 gcatctgccgatgctttctgtgcttctgcctctgccttcttctcatacagaattgcttctgcctctttctgttttttgtacagctcccagtttgcttctt 37030495  T
Q  119 gtacctaaaccatccaaa 136  Q
    | ||||| ||||||||||    
T  37030496 gcacctacaccatccaaa 37030513  T

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Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 49211761 - 49211899
Alignment:
Q  21 atctgacaatgctttctgtgcttctgcctctgccttcttctcatacagaattgcttctgattctttttgtttcttgtataattcccagttagcctcttgt 120  Q
    ||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||  || ||||||||||||||||||||||||||||||||||||    
T  49211761 atctgccaatgctttttgtgcttctgcctctgccttcttctcaaacagaattgcttctgcctccttttgtttcttgtataattcccagttagcctcttgt 49211860  T
Q  121 acctaaaccatccaaaatttcaactagtacttaaaaaat 159  Q
    ||||| | |||||| |||||||||  | |||||||||||    
T  49211861 acctacagcatccagaatttcaaccggcacttaaaaaat 49211899  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 49207187 - 49207309
Alignment:
Q  21 atctgacaatgctttctgtgcttctgcctctgccttcttctcatacagaattgcttctgattctttttgtttcttgtataattcccagttagcctcttgt 120  Q
    ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||    
T  49207187 atctgccaatgctttttgcgcttctgcctctgccttcttctcatacagaattgcttcagcctctttttgtttcttgtataattcccagttagcctcttgt 49207286  T
Q  121 acctaaaccatccaaaatttcaa 143  Q
    ||||| | |||||| ||||||||    
T  49207287 acctagagcatccagaatttcaa 49207309  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 49190950 - 49191065
Alignment:
Q  28 aatgctttctgtgcttctgcctctgccttcttctcatacagaattgcttctgattctttttgtttcttgtataattcccagttagcctcttgtacctaaa 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||| |  |||||||| || ||||||||||| |    
T  49190950 aatgctttctgtgcttctgcctctgccttcttctcatacagaattgcttctgcctccttttgtttcttgtacagctcccagtttgcttcttgtacctata 49191049  T
Q  128 ccatccaaaatttcaa 143  Q
    ||||||| ||||||||    
T  49191050 ccatccagaatttcaa 49191065  T

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Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 49187262 - 49187367
Alignment:
Q  31 gctttctgtgcttctgcctctgccttcttctcatacagaattgcttctgattctttttgtttcttgtataattcccagttagcctcttgtacctaaacca 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| ||||||||||| |  |||||||| || ||||||||||| ||||    
T  49187262 gctttctgtgcttctgcctctgccttcttctcatacagaattgcttcagtctctttctgtttcttgtacagctcccagtttgcttcttgtacctacacca 49187361  T
Q  131 tccaaa 136  Q
    ||||||    
T  49187362 tccaaa 49187367  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 49202242 - 49202345
Alignment:
Q  31 gctttctgtgcttctgcctctgccttcttctcatacagaattgcttctgattctttttgtttcttgtataattcccagttagcctcttgtacctaaacca 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| || |||||||| |  |||||||| || ||||||||||| ||||    
T  49202242 gctttctgtgcttctgcctctgccttcttctcatacagaattgcttcagcctctttctgcttcttgtacagctcccagtttgcttcttgtacctacacca 49202341  T
Q  131 tcca 134  Q
    ||||    
T  49202342 tcca 49202345  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 26756236 - 26756329
Alignment:
Q  27 caatgctttctgtgcttctgcctctgccttcttctcatacagaattgcttctgattctttttgtttcttgtataattcccagttagcctcttgt 120  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| |  |||||||| |||||||||    
T  26756236 caatgctatctgtgcttctgcctctgtcttcttctcatacagaattgcttctgcctctttttgtttcttgtacagctcccagtttgcctcttgt 26756329  T

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