View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20483_low_20 (Length: 248)
Name: NF20483_low_20
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20483_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 3733244 - 3733468
Alignment:
| Q |
11 |
cggtgtatataaaaaacaaattcatataattatgttgtttgatgctaacttttttgcgtcaaaataacattttttatatatttatagtg--atgttcgtg |
108 |
Q |
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| T |
3733244 |
cggtgtatataaaaaacaaattcatataattatgttgtctgatgctaacttttttgcgtcaaaataacatattttatatatttatagtgtgatgttcgtg |
3733343 |
T |
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| Q |
109 |
gtccattgtggattgattttgagtcaaaaagtcattcatttcaaaaataatatgcattatgatcgtatttaaattacttcccaaaagaacaaacttggtc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3733344 |
gtccattgtggattgattttgagtcaaaaagtcattcatttcaaaaataatatgcattatgatcgtatttaaattacttcccaaaagaacaaacttggtc |
3733443 |
T |
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| Q |
209 |
tggtcaagtacgtctcagataaata |
233 |
Q |
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|||| ||||||||||| |||||||| |
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| T |
3733444 |
tggttaagtacgtctcggataaata |
3733468 |
T |
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