View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20483_low_3 (Length: 604)
Name: NF20483_low_3
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20483_low_3 |
 | |
|
| [»] scaffold0287 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0287 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 20 - 596
Target Start/End: Original strand, 14372 - 14948
Alignment:
| Q |
20 |
caccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttctagcttttctcatgtgagaaaatctga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14372 |
caccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccaaaaaaatttctagcttttctcatgtgagaaaatctga |
14471 |
T |
|
| Q |
120 |
ggtcaaacaaatgattgaaaaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgt |
219 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14472 |
ggtcaagcaaatgattgaaaaaatatctaaccatgttcattcctctgaaatttcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgt |
14571 |
T |
|
| Q |
220 |
agaattgcttttggaaaaagttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14572 |
agaattgcttttggaaaaagttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttg |
14671 |
T |
|
| Q |
320 |
tttcagatcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaaca |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14672 |
tttcagatcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaaca |
14771 |
T |
|
| Q |
420 |
agtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctc |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14772 |
agtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctc |
14871 |
T |
|
| Q |
520 |
tcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttccaaacactatttttattatattcttcg |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14872 |
tcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttccaaacactatttttattatattgttcg |
14948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 20 - 596
Target Start/End: Complemental strand, 3631713 - 3631137
Alignment:
| Q |
20 |
caccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttctagcttttctcatgtgagaaaatctga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3631713 |
caccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccaaaaaaatttctagcttttctcatgtgagaaaatctga |
3631614 |
T |
|
| Q |
120 |
ggtcaaacaaatgattgaaaaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgt |
219 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3631613 |
ggtcaagcaaatgattgaaaaaatatctaaccatgttcattcctctgaaatttcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgt |
3631514 |
T |
|
| Q |
220 |
agaattgcttttggaaaaagttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3631513 |
agaattgcttttggaaaaagttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttg |
3631414 |
T |
|
| Q |
320 |
tttcagatcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaaca |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3631413 |
tttcagatcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaaca |
3631314 |
T |
|
| Q |
420 |
agtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctc |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3631313 |
agtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctc |
3631214 |
T |
|
| Q |
520 |
tcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttccaaacactatttttattatattcttcg |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3631213 |
tcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttccaaacactatttttattatattgttcg |
3631137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 20 - 569
Target Start/End: Complemental strand, 3621316 - 3620767
Alignment:
| Q |
20 |
caccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttctagcttttctcatgtgagaaaatctga |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
3621316 |
caccatacaatgattgttggagagagataagaaaaatttgtgttgtccatttctttagctccaaaaaaatttctagctttgctcatgtgagaaaatctga |
3621217 |
T |
|
| Q |
120 |
ggtcaaacaaatgattgaaaaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgt |
219 |
Q |
| |
|
|||||| | |||||||||||| ||||||| ||||||| ||| | |||| ||||||||||||||| || |||||||||||| ||| ||||| |||||| |
|
|
| T |
3621216 |
ggtcaagctaatgattgaaaagatatctaaccatgtttgttcttccaaaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgt |
3621117 |
T |
|
| Q |
220 |
agaattgcttttggaaaaagttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| |||| |
|
|
| T |
3621116 |
agaattgcttttggaaaaagttatgagcatgaagggggtgagaaaagcaggttccatggtttacttaatgagacacaagctattttcctttccttttttg |
3621017 |
T |
|
| Q |
320 |
tttcagatcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaaca |
419 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
3621016 |
tttcagattatattccttttatggggtgggttgataaactcacaggggcaattgctcgtgttgacaacactttcaaggctttggatgagttctttgaaca |
3620917 |
T |
|
| Q |
420 |
agtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctc |
519 |
Q |
| |
|
|||||| | ||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3620916 |
agtcctcaaggaacatctcaatcctaataataggaaaaaagatgatgaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctc |
3620817 |
T |
|
| Q |
520 |
tcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttc |
569 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
3620816 |
tcaattgatctcaccaataatcacatcaaagccgtcgttatggtatgttc |
3620767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 9401208 - 9401162
Alignment:
| Q |
313 |
ttctttgtttcagatcatattccttttatggggtggattgataaact |
359 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
9401208 |
ttctttgtttctgattatattccatttatgggttggattgataaact |
9401162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University