View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20483_low_5 (Length: 521)
Name: NF20483_low_5
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20483_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 43279462 - 43279959
Alignment:
| Q |
1 |
ctaggagatgaggttggtaaatatatatcaaccccatgcagcatggaactgaaatgaaaaaagagctttggtgacaagaacttgtaaatatatcaacaac |
100 |
Q |
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| T |
43279462 |
ctaggagatgaggttggtaaatatatatcaaccccatgcagcatggaactgaaatgaaaaaagagctttggtgacaagaacttgtaaatatatcaacaac |
43279561 |
T |
|
| Q |
101 |
tttgaactgatagctaagagaatcaatactttgttcattttttgttgtacccgagtttaaatccaaaattcttcctttgtctgtgtgaatatttcggttg |
200 |
Q |
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| T |
43279562 |
tttgaactgatagctaagagaagcaatactttgttcattttttgttgtacccgagtttaaatccaaaattcttcctttgtctgtgtgaatatttcggttg |
43279661 |
T |
|
| Q |
201 |
atattttccacccagtcaacttaacaaaatatcaatagttatgaaatagacgtgatacattttggtgtatagttaaattaggacaatgggatggggtcct |
300 |
Q |
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| T |
43279662 |
atattttccacccagtcaacttaacaaaatatcaatagttatgaaatagacgtgatacattttggtgtatagttaaattaggacaatgggatggggtcct |
43279761 |
T |
|
| Q |
301 |
cgtattctcctatactttgaacaatctagtgattgtttcaacttccaactaaacagtttgtactatagttgctattgtttttctcttccatgtgtgcttg |
400 |
Q |
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| T |
43279762 |
cgtattctcctatactttgaacaatctagtgattgtttcaacttccaactaaacagtttgtactatagttgctattgtttttctcttccatgtgtgcttg |
43279861 |
T |
|
| Q |
401 |
tagctgtgtgtgttggaatcttctataaataaaacaattatactagctagtagctaggaattaag---taattgttacaaaagtttcattgcataatg |
495 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
43279862 |
taactgtgtgtgttggaatcttctataaataaaacaattatactagctagtagctaggaattaagtaataattgtcacaaaagtttcattgcataatg |
43279959 |
T |
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