View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20483_low_6 (Length: 508)
Name: NF20483_low_6
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20483_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 9e-96; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 13204440 - 13204661
Alignment:
| Q |
4 |
atcataggctccatctacaaagtctaaccaaaagtccaaggttgttggcaaatctgatggtgaagttagtaaaaaatctaaggaatctgcacaaaaaact |
103 |
Q |
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| T |
13204440 |
atcaaaggctccatctgcaaagtctaaccaaaagtccaaggttgctggcaaatctgacggtgaaggtagtaaaaaatctaaggaatctgcacaaaaaact |
13204539 |
T |
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| Q |
104 |
gttggtaaatctaaggatcgttctgtgaaaaacggtggtaaaaattatgtgggtttcgaaatgaggggaattaacggttttattgctgggattgaaacga |
203 |
Q |
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| T |
13204540 |
ggtggtaaatctaaggatcgttctgtgaaaagcggttgtaaaaattatgtgggtttcgaaatgaggggaattaacggttttgttgctgggattgaaatga |
13204639 |
T |
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| Q |
204 |
aatgaatcaaaatgtgattagg |
225 |
Q |
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| T |
13204640 |
aatgaatcaaattgtgattagg |
13204661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 292 - 492
Target Start/End: Original strand, 13204736 - 13204942
Alignment:
| Q |
292 |
tataagagaagtgtaatttggtgcaaaacttttctcactaaaaacacgaacacacattttac------actccctatttatggttaatcatattgctatt |
385 |
Q |
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| T |
13204736 |
tataagagaagtgcaatttggtgcgaaatttttctcactaaaaacacgaacacaaattttacctgcaaactccctatttatggttaatcatattgctatt |
13204835 |
T |
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| Q |
386 |
gtgtctccaaaggaatctactttgaaaaaggtgtgttagttttcacctattttatatatttaacacaataagttcattttgtttcatgattattaaggct |
485 |
Q |
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| T |
13204836 |
gtgtctgcaaaggaatctactttgaaaaaggtgtgttagttttcacctattttatgtatttaacacaataagttcactttgtttcatgattattaaggct |
13204935 |
T |
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| Q |
486 |
tgccttc |
492 |
Q |
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| T |
13204936 |
tgccttc |
13204942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 367 - 487
Target Start/End: Original strand, 13178739 - 13178860
Alignment:
| Q |
367 |
ggttaatcatattgctattgtgtctccaaaggaatctactttg-aaaaaggtgtgttagttttcacctattttatatatttaacacaataagttcatttt |
465 |
Q |
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| T |
13178739 |
ggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaaaggtgggttacctttcacacattttatgtatttaacataagaagttcaaatt |
13178838 |
T |
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| Q |
466 |
gtttcatgattattaaggcttg |
487 |
Q |
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| T |
13178839 |
gtttcgtgattattaaggcttg |
13178860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 367 - 449
Target Start/End: Original strand, 13203831 - 13203913
Alignment:
| Q |
367 |
ggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaaggtgtgttagttttcacctattttatatatttaac |
449 |
Q |
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| T |
13203831 |
ggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaaggtgtgttacctttcacccattctatgtatttaac |
13203913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 387 - 492
Target Start/End: Complemental strand, 9944001 - 9943898
Alignment:
| Q |
387 |
tgtctccaaaggaatctactttgaaaaaggtgtgttagttttcacctattttatatatttaacacaataagttcattttgtttcatgattattaaggctt |
486 |
Q |
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| T |
9944001 |
tgtcttcaaaggaatctactttgaaaaa--tgtgttacttttcgcccattttatgtatttaacctaataagttcactttgtttcatgcttattaaggttt |
9943904 |
T |
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| Q |
487 |
gccttc |
492 |
Q |
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| T |
9943903 |
gacttc |
9943898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 3038293 - 3038424
Alignment:
| Q |
14 |
ccatctacaaagtctaaccaaaagtccaaggttgttggcaaatctgatggtgaagttagtaaaaaatctaaggaatctgcacaaaaaactgttggtaaat |
113 |
Q |
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| T |
3038293 |
ccatctgcaaagtccaaccaaaagtccaaggttgctggcaaatctgatggtgaagttactaaaaaatccaaggattctgcacaaaaaactggtggtaaat |
3038392 |
T |
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| Q |
114 |
ctaaggatcgttctgtgaaaaacggtggtaaa |
145 |
Q |
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| T |
3038393 |
ctgaggatcgttctgtgaaaagtggtggtaaa |
3038424 |
T |
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