View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20483_low_8 (Length: 436)
Name: NF20483_low_8
Description: NF20483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20483_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 21 - 424
Target Start/End: Complemental strand, 295443 - 295035
Alignment:
| Q |
21 |
aaggttgatgccttaattttggaccaagcaaagagagataaaataaaacaggaagacgtggcaagagaggtgcctatgatgatgttactatgttaattgt |
120 |
Q |
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| T |
295443 |
aaggttgatgccttaattttggaccaagcaaagagagataaaataaaacaggaagacgtggcaagagaggtgcctatgatgatgttactatgttaattgt |
295344 |
T |
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| Q |
121 |
agtttgaacttggaacgaatgaatgaatgagcatcatatcatatcata-----acaatatggcttctttgctccatccaactccaactgttaccactata |
215 |
Q |
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| T |
295343 |
agtttgaacttggaacgaatgaatgaatgagcatcatatcatatcatatcataacaatatggcttctttgctccatccaactccaactgttaccactata |
295244 |
T |
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| Q |
216 |
cttaagcatcgaacatcaacaatctgtttcttctgtcccttaaaacctacaaatgtttctttcttaactaacacaaaccgtgtcaataccaacactacaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
295243 |
cttaagcatcgaacatcaacaatctgtttcttctgtcccttaaaacctacaaatgtttctttcttaactaacacaaaccgtgtcaataccaacactacaa |
295144 |
T |
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| Q |
316 |
agtgtaatgcattttttgataataatgtcaccagtggtttgttggaggttggtgggggccacattccttctttccttcgatcaggactacttcagtttca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
295143 |
agtgtaatgcattttttgataataatgtcaccagtggtttgttggaggttggtggggaccacattccttctttccttcgatcaggactacttcagtttca |
295044 |
T |
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| Q |
416 |
agaattatc |
424 |
Q |
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| T |
295043 |
agaattatc |
295035 |
T |
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