View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_high_12 (Length: 371)
Name: NF20484_high_12
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 47101362 - 47101017
Alignment:
| Q |
17 |
atgatcaagctgcgattttaatgagtggtagaaatgccaaaacaaatttcccaataacacaaactcctgaaggtgatccaaaaagcattacaagtaatga |
116 |
Q |
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| T |
47101362 |
atgatcaagctgcgattttaatgagtggtagaaatgccaaaacaaatttcccaataacacaaacttctgaaggtgatccaaaaagcattacaagtaatga |
47101263 |
T |
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| Q |
117 |
gaacaaaccttcaacttcaaaggatctagaagaaattttacatgcaaaacttcgaaaatgtagcaaggtaccatctccttccatgacttgtttaaggctt |
216 |
Q |
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| T |
47101262 |
gaacaaaccttcaacttcaaaggatctagaagaaattttacatgcaaaacttcgaaaatgtagcaaggtaccatctccttccatgacttgtttaaggctt |
47101163 |
T |
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| Q |
217 |
gacacagagaactctcacattggtgtgtggcaaaagcgtgctgggaagtgttctgaatcaaattgggttatgactgttcagcttggcaaaaagatgagtg |
316 |
Q |
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| T |
47101162 |
gacacagagaactctcacattggtgtgtggcaaaagcgtgctgggaagtgttctgaatcaaattgggttatgactgttcagcttgggaaaaagatgagtg |
47101063 |
T |
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| Q |
317 |
taacccaagatagtggtagtagcagtagtagtgtggcaccttcatc |
362 |
Q |
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| T |
47101062 |
taacccaagatagtggtagtagcagtagtagtgtggcaccttcatc |
47101017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 2428534 - 2428445
Alignment:
| Q |
159 |
tgcaaaacttcgaaaatgtagcaaggtaccatctccttccatgacttgtttaaggcttgacacagagaactctcacattggtgtgtggca |
248 |
Q |
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| T |
2428534 |
tgcaaaacttagaaaatgttgcaagtcaccttcaccttccctcacttgtctaaggcttgacactgagaattcacactttggagtgtggca |
2428445 |
T |
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