View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20484_high_14 (Length: 351)
Name: NF20484_high_14
Description: NF20484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20484_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 50520673 - 50520393
Alignment:
| Q |
1 |
ttcccaatgtcctaatccctttgcatttgcttgtttgtttccactccaaatccaattctaagtcaaaaccagtccccctcacggcctcatcctttatatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
50520673 |
ttcccaatgtcctaatccctttgcatttgcttgtttgtttccactccaaatccaattctaagacaaaaccagtccccctcatggcctcatcctttatatt |
50520574 |
T |
|
| Q |
101 |
aaaaatcaaaattattactacactcctctgttttcataatattattaaaagggtactctgttttatttagctttagatttcctaatactagtacatatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50520573 |
aaaaatcaaaattattactacactcctctgttttcataatattattaaaagggtactctgttttatttagctttagatttcctaatactagtacatatta |
50520474 |
T |
|
| Q |
201 |
agaaaaatcataaggaatttaattatataatagacttggatttgtctaaagatgttccattaaaactttgaagtgttctcc |
281 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50520473 |
agaaaaataataaggaatttaattatataattaacttggatttgtctaaagatgttcgtttaaaactttgaagtgttctcc |
50520393 |
T |
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